Dbfetch
ID MF033147; SV 1; linear; genomic DNA; STD; HUM; 7399 BP. XX AC MF033147; XX DT 14-JUL-2017 (Rel. 133, Created) DT 14-JUL-2017 (Rel. 133, Last updated, Version 1) XX DE Homo sapiens isolate BY01485 MHC class II antigen (HLA-DQB1) gene, DE HLA-DQB1*02:02:01:01v allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-7399 RA Lazaro A.M., Hou L., Gerfen J., Enriquez E., Hurley C.K.; RT ; RL Submitted (28-APR-2017) to the INSDC. RL Oncology, Georgetown University, 3970 Reservoir Rd, N.W., Washington, DC RL 20057, USA XX DR MD5; bc7a6873d756f64650163f177c9764a3. DR Ensembl-Gn; ENSG00000225824; homo_sapiens. DR Ensembl-Tr; ENST00000419914; homo_sapiens. DR Ensembl-Tr; ENST00000424806; homo_sapiens. XX CC ##Assembly-Data-START## CC Assembly Method :: Assign TruSight v. HLA2.1.0.934; GenDex v. CC V2.5.0.8542; Sequencher v. V5.4.1 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..7399 FT /organism="Homo sapiens" FT /isolate="BY01485" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <450..>7193 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02:02:01:01v" FT mRNA join(<450..558,1997..2266,5151..5432,5949..6059, FT 7180..>7193) FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02:02:01:01v" FT /product="MHC class II antigen" FT CDS join(450..558,1997..2266,5151..5432,5949..6059,7180..7193) FT /codon_start=1 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02:02:01:01v" FT /product="MHC class II antigen" FT /db_xref="GOA:A0A0U5IHY9" FT /db_xref="InterPro:IPR000353" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR014745" FT /db_xref="InterPro:IPR036179" FT /db_xref="UniProtKB/TrEMBL:A0A0U5IHY9" FT /protein_id="ASK05526.1" FT /translation="MSWKKALRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKG FT MCYFTNGTERVRLVSRSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKR FT AAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRW FT FRNGQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRA FT QSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKGLLH" XX SQ Sequence 7399 BP; 1867 A; 1723 C; 1768 G; 2041 T; 0 other; tatgacagca attttctctc ccctgaaata tgatccccac ttaatttgcc ctattgaaag 60 aatcccaagt ataagaacaa ctggttttta atcaatatta caaagatgtt tactgttgaa 120 tcgcattttt ctttggcttc ttaaaatccc ttaggcattc aatcttcagc tcttccataa 180 ttgagaggaa attttcacct caaatgttca tccagtgcaa ttgaaagacg tcacagtgcc 240 aggcactgga ttcagaacct tcacacaaaa aaaatctgcc cagagacaga tgaggtcctt 300 cagctccagt gctgattggt tcctttccaa gggaccatcc aatcctacca cgcatggaaa 360 catccacaga tttttattct ttctgccagg tacatcagat ccatcaggtc cgagctgtgt 420 tgactaccac ttttcccttc gtctcaatta tgtcttggaa aaaggctttg cggatccccg 480 gaggccttcg ggcagcaact gtgaccttga tgctgtcgat gctgagcacc ccagtggctg 540 agggcagaga ctctcccggt aagtgcaggg cagctgctct ccagagccgc tactctggga 600 acaggctctc cttgggctgg ggtacgggga tggtgatctc cataatctcg gacacaatct 660 tttatcaaca tttcctctgt tttgggaaag agagctatgt tgcatttcca tttatctttt 720 aatgatgaag tgaggacaat ccaatcccat cctacaggct taagcctgga agaggaggag 780 agaggagaga aaagaggaga caaagtgttc atttactacc agtgatagga caaagtgagc 840 atggggttat ttttgaagat atgaatttct ccaaagacac agcaggattt gccatttagg 900 cgtgtcccaa gacttgcctg gactaaatat tatgatttcc tgcattggga aatgcaaggc 960 agcaatggtg tctgtagtct ccgtatttgg ggaaaagttg tctgtattcc tgacccagtg 1020 gagcgtttgt ggaggcaaaa tcttggtact gagggaagct gactggctga ccacagaaag 1080 agagccttca ggtttcactg atttatgggc aaatggtgac ctgagtggga ttcagatacc 1140 cgagttgatg atggactaaa tttagtagaa aggaggatgt aaagaaggga aataacacat 1200 actgtgaaac cactcatttc agacacagaa caatacttta cataaattct ctctcactcc 1260 ttctaacatc ctgtgtgtag atatcatgat tttcttttac acaattatac ttgtgatatg 1320 gatattctgt tacataacct gcccgggctg gtgactgcca cagtttaatg ggaatctagt 1380 ttatcaaatt caaaagcttg tgctctttcg gtgaataaat gtttctttct aggactcaga 1440 gatctaggac tcccttcttt ctaacacaga agtgagtgaa cctcacaggg cacttgggag 1500 ggtaaatccg ggcatgggaa ggaaggtatt ttacccaggg accaagagaa taggcgtatc 1560 ggaagaggac aggtttaatt cctggacctg tctcgtcatt cccttgaact gtcaggttta 1620 tgtggataac tttatctctg aggtacccag gagctccatg gaaaatgaga tttcatgcga 1680 gaacgccctg atccctctaa gtgcagaggt ccatgtaaaa tcagcccgac tgcctcttca 1740 cttggttcac aggccgagac agggacaggg ctttcctccc tttcctgcct ttaggaaggc 1800 ggattcccga agacccccga gagggcgggc agggctgggc agagccgccg ggaggatccc 1860 aggtctgcag cgcgaggcac gggccggcgg gaacttgtgg tcgcgcgggc tgttccacag 1920 ctccgggccg ggtcagggtg gcggctgcgg gggcggacgg gctgggccgc actgactggc 1980 cggtgattcc tcgcagagga tttcgtgtac cagtttaagg gcatgtgcta cttcaccaac 2040 gggacagagc gcgtgcgtct tgtgagcaga agcatctata accgagaaga gatcgtgcgc 2100 ttcgacagcg acgtggggga gttccgggcg gtgacgctgc tggggctgcc tgccgccgag 2160 tactggaaca gccagaagga catcctggag aggaaacggg cggcggtgga cagggtgtgc 2220 agacacaact accagttgga gctccgcacg accttgcagc ggcgaggtga gcggcgtcgc 2280 ccctctgcga ggcccaccct tggccccaag tctctgcgcc aggaggggcg aagggtcgtt 2340 gcctctggaa cctgagcccc gtttgttcca ccccagagga caggaggcag cggcgagagt 2400 ggtgggggca ggtgcatcgg aggtgcgggg acctagggca gagcaggggg acaggcagag 2460 ttggccaggc tgcctagtgt cgccccagcc tacccgttcg tcggccttgt cctctgctct 2520 gcatgttctt gcctcgtgcc ttatgcattt gcctcctttt gccttacctt tgctaagcag 2580 ctctctctgc tcagaatgcc cgccctcttc ccctgcccgc ccgcccgccc cgctagcact 2640 gccccaccca gcaaggccca cgtgcacagc tcttgcagca ggaagcttca ggcttagcct 2700 ggtggagtta gggctgttcc acaactgcgc gcaggacatc cagcaattac agttgtgaaa 2760 taagatattt taacttttgg cttcaaatca ttattcatcg taattctgtt ttcttaaatg 2820 gctctcattc atggcagaga tctttgaggt gagggtgttt taatcattgc atgcctagta 2880 cctgacacat tgactggtat gtggtgtgag ctcaatgatc ttctgttaaa ttaatgaata 2940 aatgtactca gctgcccatc cacttaggct caagaaaaaa aaagaggtaa acagagcctt 3000 aaaaatggac tttattaatt attttctata attttgctta atgctttaaa gtaaactctt 3060 attgacttgg atcttaatag agtttgtgaa tacaaaatct gaggaaaaaa gtttttgcta 3120 aaaataaaaa caacgcttga aagatattgt aatgcagttt aaatttcttt tctttttttt 3180 tttttttttt gagacggatt ctcactctgt cgcccaggcc ggagtgcagt ggcgcgatct 3240 cggctcactg caagctccgc ctcccgggtt cacgccattc tcctgcctca gcctcctgag 3300 taggtgggat tacaggcgcg tgccaccacg cccggctaat ttttttgtat ttttagtaga 3360 ggcggggttt caccgtgtta gccaggatgg tctggatctc ctgacctcat gatccgcccg 3420 cctcggcctc ccaaagtgct gggattacag gtgtgagcca cagtgcccgg ccggcacttt 3480 taatttctta gaaaagctga acaaatggca caatgcaaag agcaaaagtt ttggaataaa 3540 tagattgaag ccattaaatt attggataaa aatagtttcg ggttgctttt ggcctaggtt 3600 ctcccctccc cccatgacta tccacttcag gaataaacat tctgaaagtc aattttaccc 3660 atttagtgag catttatttc tagacagttg ccttatcaaa taccatctat gttacgtcat 3720 ttaatctcac agttacttgt gcatcagaga ttagcatcac cactttatat attggtacat 3780 gataaacact ttattggtca tggatgggga gatggtcact gtaggctaat attggtacat 3840 gataaacact ttaagtaatc agcccataat tgctcaccaa gaccttaagc ctcccaaagt 3900 acacaacatt ctttgtgttc ttcactacac atccatagag tctaagggac gtaaagcctc 3960 gttaaagcca gttttgacca gaagcagcaa tgagtctatt cctgtgtgtt ttccatgtta 4020 atgggacaaa atgatacttt caaggcattg aaaattcatg attaatcaat cgctagtctg 4080 accccagtgt tatctatgca ggtttgcaaa acctttagtt tacttaatac tcccttgcct 4140 tcttttgatt cacatcctaa tgccagcaaa tacttatgtt tttgctattt cagttccatt 4200 tccataaaat ttattttatc atcttttctc ataaatttat gccctctatt tttactccca 4260 atctgtttaa gatgaacaaa tcttataagg ccacatagct gactgttatt tctgttggac 4320 tccaggaagg agaacctaaa gaaaagttca agtccaagca gaaaccgtga tttcttccag 4380 atgatggctc atgagtgcca tttaattggg gtgccacctg gtgacctcag caaatcccag 4440 ctatatttat gtgttcacat tacaggatca ttaacccaga ccgaccactg cacagatctc 4500 agaatatttt ctatggagaa catacataat aatgcctgat ttcagaagaa gaaagtaatt 4560 ctcaatagca aggggatgga gtagggtaga cagctgtaat taaactcact tgtgtgataa 4620 aaagaaatta aggaaaaaag aaaatgagag aacatattac taaataaaga aagcatacat 4680 taaatattta ctatagtttc acactaagag aataaaggaa atgcaataaa gtggcctgaa 4740 aggtaaagga tgagatgtgt aaaggggtgt agtattttta ctatgagcag caatctgaga 4800 agataaagga atcgagttac gggcaaacat gatgtttgat cagtgttatt tgttttcaag 4860 gcctgcctaa atttttttca aatattacaa acttttgaaa taacattctt tgttttttgc 4920 tgtctgttac taggttgcac attttataaa ggcagggacc atggtatgtt gtttgtcttt 4980 ggattctcag tgattgttat atttatattt gttgaaggaa ccttaatcca agacttggac 5040 tccaagtatc tttccactct ggttccaagg agggaccttc ctcacagcag gcatgctgtg 5100 tggtctcaca tctcactcct atatctttcc ctgtctgtta ctgccctcag tggagcccac 5160 agtgaccatc tccccatcca ggacagaggc cctcaaccac cacaacctgc tggtctgctc 5220 ggtgacagat ttctatccag cccagatcaa agtccggtgg tttcggaatg gccaggagga 5280 gacagctggc gttgtgtcca ccccccttat taggaatggt gactggacct tccagatcct 5340 ggtgatgctg gaaatgactc cccagcgtgg agacgtctac acctgccacg tggagcaccc 5400 cagcctccag agccccatca ccgtggagtg gcgtaagggg atattgagtt tctgttactg 5460 tgggccccac aagacaaagg acagagctcc ttctgaccca tcccttccca tctcttatcc 5520 ctgatgtcac tgctgagctg ggaatcacag gagactagag cacctctagt tccatggcga 5580 gtgcatcaga agaatcctga tctcatcacc tttccagatg ctagggaaat tactctacat 5640 actgttgctc tggatcccag tcctgattgc tctgaggaac tgattattag ggctggtgac 5700 tgggatctta gggtctaagt ttatggatga gttcctgagg agtggagatc tgcttcccca 5760 ctctgtcacc tactcactgt atccaagtac ctattggctg gcctttccct cccttagggg 5820 tggtctgaat ggagaactag gttcctttga tgccttcacc tcctgcatct cagactggac 5880 ttcagctcct catcagggaa actatggggt atggggacaa acactgacac tcaggctctg 5940 cttctcaggg gctcaatctg aatctgccca gagcaagatg ctgagtggca ttggaggctt 6000 cgtgctgggg ctgatcttcc tcgggctggg ccttatcatc catcacagga gtcagaaagg 6060 tgaggaaccc caggggaaaa ggggaagatg gcctgtgacc cagaccctct gttcagagag 6120 gtcctgtctc tagatgtagc tctttcctcc tgaccctgag aggaagaaag ctgagctgga 6180 agtggaagga gacaggacaa ggttggagga ggcattggaa tctgatttta ctagctgaag 6240 ggtagccctg tcacagagct gactgataga gcttattcca gggcatcctt accattcatc 6300 attgtctcac tggctccttt ccaaaaactt cctccattaa gagggtcaga gcctcggcct 6360 ccttgccttc tagtgacaat ttcctttatt ttaggggatt ttaaattagg gtgcttaagg 6420 acttgaagaa catgaatggg aagagaatat aactctaatt aagtcacatg tgtcattttc 6480 ctttggggtg agagagtggc tgttcatgta atgagacctt tctctgcata acttcctttt 6540 gtaagacctc aagggcctcc accagcaggt aatatttcag ccgtgatcca gtgtggggag 6600 ggcacaggtg taagagggaa gagcatgagc tgagtgtacc tgacagtagt ggtctctgtt 6660 catggtatat ttgctgctat gaggatcaag acttaggggt gaagtttgcc agtttctagg 6720 aatctccaga ggttgttccc cagaaccaag ccttaacttt ggtggtatct tcctgtgaaa 6780 tgtggagcca gaaccacggc ttaaatgtta gacactagga tgatgcccac tttgtgccac 6840 atgatggtgg ctactgcctg taggcatttt ccagtgactg aaagaggctg ctagtggtag 6900 ggatgaggta tcatccaatt tcctaaaaag attgaaccct tcatattcac cagaagagta 6960 acagctgttc ccccacctcc cacacatctg catcaagctg aagttctgtg tcttcatgag 7020 ctgatttcac ctttgcacag atcttggggg aggtgatgat aatacactct ggacctcagc 7080 tttgtctgtc tgaagctgca ggaggcccct gaggggtggg ggagatggca ggcccaccag 7140 cgtaccctgt gctgatcatc cctcttctct cttcttcagg gctcctgcac tgactcctga 7200 gactatttta actgggattg gttatcactt ttctgtaacg cctgcttgtc cctgcccaga 7260 attcccagct gtctgtgtca gcctgtcccc ctgagatcag agtcctacag tggctgtcac 7320 gcagccacca ggtcatctcc tttcatcccc accttgaggc ggatggctgt gaccctactt 7380 cctgcactga cccacagcc 7399 //