Dbfetch
ID LT599286; SV 1; linear; genomic DNA; STD; HUM; 3336 BP.
XX
AC LT599286;
XX
DT 14-JUL-2016 (Rel. 129, Created)
DT 19-JUL-2017 (Rel. 133, Last updated, Version 3)
XX
DE Homo sapiens, HLA-B gene for MHC class I antigen, cell line
DE DKMS-LSL-B-1224, allele HLA-B*15:new
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RP 1-3336
RA Albrecht V.;
RT ;
RL Submitted (06-JUN-2016) to the INSDC.
RL Research and Development, DKMS Life Science Lab, Fiedler Str. 43, Saxony,
RL 01307 Dresden, GERMANY.
XX
RN [2]
RX DOI; https://doi.org/10.1111/tan.13057.
RX PUBMED; 28547825.
RA Albrecht V., Zweiniger C., Surendranath V., Lang K., Schofl G., Dahl A.,
RA Winkler S., Lange V., Bohme I., Schmidt A.H.;
RT "Dual redundant sequencing strategy: Full-length gene characterisation of
RT 1056 novel and confirmatory HLA alleles";
RL HLA. -:1-9(2017).
XX
DR MD5; 9a863873025b1bcaf3127dee4d7dce88.
DR IMGT/HLA; HLA-B*15:412; HLA16259.
XX
FH Key Location/Qualifiers
FH
FT source 1..3336
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /cell_line="DKMS-LSL-B-1224"
FT /db_xref="taxon:9606"
FT exon 1..357
FT /gene="HLA-B"
FT /allele="HLA-B*15:new"
FT /number=1
FT CDS join(285..357,487..756,1002..1277,1853..2128,2233..2349,
FT 2791..2823,2930..2973)
FT /codon_start=1
FT /transl_table=1
FT /gene="HLA-B"
FT /allele="HLA-B*15:new"
FT /product="MHC class I antigen"
FT /function="antigen presenting molecule"
FT /db_xref="GOA:A0A1C3PHL8"
FT /db_xref="InterPro:IPR001039"
FT /db_xref="InterPro:IPR003006"
FT /db_xref="InterPro:IPR003597"
FT /db_xref="InterPro:IPR007110"
FT /db_xref="InterPro:IPR010579"
FT /db_xref="InterPro:IPR011161"
FT /db_xref="InterPro:IPR011162"
FT /db_xref="InterPro:IPR013783"
FT /db_xref="InterPro:IPR036179"
FT /db_xref="InterPro:IPR037055"
FT /db_xref="UniProtKB/TrEMBL:A0A1C3PHL8"
FT /protein_id="SBW38507.1"
FT /translation="MRVTAPRTVLLLLSGALALTETWAGSHSMRYFYTAMSRPGRGEPR
FT FIAVGYVDDTQFVRFDSDAASPRMAPRAPWIEQEGPEYWDRETQISKTNTQTYRESLRN
FT LRGYYNQSEAGSHTLQRMYGCDVGPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTA
FT AQISQRKWEAAREAEQWRAYLEGLCVEWLRRYLENGKETLQRADPPKTHVTHHPISDHE
FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRY
FT TCHVQHEGLPKPLTLRWEPSSQSTIPIVGIVAGLAVLAVVVIGAVVATVMCRRKSSGGK
FT GGSYSQAASSDSAQGSDVSLTA"
FT intron 358..486
FT /gene="HLA-B"
FT /allele="HLA-B*15:new"
FT /number=1
FT exon 487..756
FT /gene="HLA-B"
FT /allele="HLA-B*15:new"
FT /number=2
FT intron 757..1001
FT /gene="HLA-B"
FT /allele="HLA-B*15:new"
FT /number=2
FT exon 1002..1277
FT /gene="HLA-B"
FT /allele="HLA-B*15:new"
FT /number=3
FT intron 1278..1852
FT /gene="HLA-B"
FT /allele="HLA-B*15:new"
FT /number=3
FT exon 1853..2128
FT /gene="HLA-B"
FT /allele="HLA-B*15:new"
FT /number=4
FT intron 2129..2232
FT /gene="HLA-B"
FT /allele="HLA-B*15:new"
FT /number=4
FT exon 2233..2349
FT /gene="HLA-B"
FT /allele="HLA-B*15:new"
FT /number=5
FT intron 2350..2790
FT /gene="HLA-B"
FT /allele="HLA-B*15:new"
FT /number=5
FT exon 2791..2823
FT /gene="HLA-B"
FT /allele="HLA-B*15:new"
FT /number=6
FT intron 2824..2929
FT /gene="HLA-B"
FT /allele="HLA-B*15:new"
FT /number=6
FT exon 2930..3336
FT /gene="HLA-B"
FT /allele="HLA-B*15:new"
FT /number=7
XX
SQ Sequence 3336 BP; 614 A; 973 C; 1049 G; 700 T; 0 other;
gatcaggacg aagtcccagg tcccggacgg ggctctcagg gtctcaggct ccgagagcct 60
tgtctgcatt ggggaggcgc agcgttgggg attccccact cccacgagtt tcacttcttc 120
tcccaaccta tgtcgggtcc ttcttccagg atactcgtga cgcgtcccca tttcccactc 180
ccattgggtg tcgggtgtct agagaagcca atcagtgtcg ccggggtccc agttctaaag 240
tccccacgca cccacccgga ctcaaaatct cctcagacgc cgagatgcgg gtcacggcgc 300
cccgaaccgt cctcctgctg ctctcgggag ccctggccct gaccgagacc tgggccggtg 360
agtgcggggt cggcagggaa atggcctctg tggggaggag cgaggggacc gcaggcgggg 420
gcgcaggacc cggggagccg cgccgggagg agggtcgggc gggtctcagc ccctcctcgc 480
ccccaggctc ccactccatg aggtatttct acaccgccat gtcccggccc ggccgcgggg 540
agccccgctt catcgcagtg ggctacgtgg acgacaccca gttcgtgagg ttcgacagcg 600
acgccgcgag tccgaggatg gcgccccggg cgccatggat agagcaggag gggccggagt 660
attgggaccg ggagacacag atctccaaga ccaacacaca gacttaccga gagagcctgc 720
ggaacctgcg cggctactac aaccagagcg aggccggtga gtgaccccgg cctggggcgc 780
aggtcacgac tccccatccc ccacgtacgg cccgggtcgc cccgagtctc cgggtccgag 840
atccgccccc ctgaggccgc gggacccgcc caaaccctcg accggcgaga gccccaggcg 900
cgtttacccg gtttcatttt cagttgaggc caaaatcccc gcgggttggt cggggcgggg 960
cggggctcgg gggacggggc tgaccgcggg gcctgggcca gggtctcaca ccctccagag 1020
gatgtacggc tgcgacgtgg ggccggacgg gcgcctcctc cgcgggcatg accagtccgc 1080
ctacgacggc aaggattaca tcgccctgaa cgaggacctg agctcctgga ccgcggcgga 1140
cacggcggct cagatctccc agcgcaagtg ggaggcggcc cgtgaggcgg agcagtggag 1200
agcctacctg gagggcctgt gcgtggagtg gctccgcaga tacctggaga acgggaagga 1260
gacgctgcag cgcgcgggta ccaggggcag tggggagcct tccccatctc ctataggtcg 1320
ccggggatgg cctcccacga gaagaggagg aaaatgggat cagcgctaga atgtcgccct 1380
cccttgaatg gagaatggca tgagttttcc tgagtttcct ctgagggccc cctcttctct 1440
ctaggacaat taagggatga cgtctctgag gaaatggagg ggaagacagt ccctaggata 1500
gtgatcaggg gtcccctttg acccctgcag cagccttggg aaccgtgact tttcctctca 1560
ggccttgttc tctgcctcac actcagtgtg tttggggctc tgattccagc acttctgagt 1620
cactttacct ccactcagat caggagcaga agtccctgtt ccccgctcag agactcgaac 1680
tttccaatga ataggagatt atcccaggtg cctgcgtcca ggctggtgtc tgggttctgt 1740
gccccttccc caccccaggt gtcctgtcca ttctcaggct ggtcacatgg gtggtcctag 1800
ggtgtcccat gagagatgca aagcgcctga attttctgac tcttcccatc agacccccca 1860
aagacacatg tgacccacca ccccatctct gaccatgagg ccaccctgag gtgctgggcc 1920
ctgggcttct accctgcgga gatcacactg acctggcagc gggatggcga ggaccaaact 1980
caggacaccg agcttgtgga gaccagacca gcaggagata gaaccttcca gaagtgggca 2040
gctgtggtgg tgccttctgg agaagagcag agatacacat gccatgtaca gcatgagggg 2100
ctgccgaagc ccctcaccct gagatggggt aaggaggggg atgaggggtc atatctgttc 2160
tcagggaaag caggagccct tctggagccc ttcagcaggg tcagggcccc tcatcttccc 2220
ctcctttccc agagccatct tcccagtcca ccatccccat cgtgggcatt gttgctggcc 2280
tggctgtcct agcagttgtg gtcatcggag ctgtggtcgc tactgtgatg tgtaggagga 2340
agagctcagg tagggaaggg gtgaggggtg gggtctgggt tttcttgtcc cactgggggt 2400
ttcaagcccc aggtagaagt gttccctgcc tcattactgg gaagcagcat ccacacaggg 2460
gctaacgcag cctgggaccc tgtgtgccag cacttactct tttgtgcagc acatgtgaca 2520
atgaaggaca gatgtatcgc cttgatggtt gtggtgttgg ggtcctgatt ccagcattca 2580
tgagtcaggg gaaggtccct gctaaggaca gaccttagga gggcagttgg tccaggaccc 2640
acacttgctt tcctcgtgtt tcctgatcct gccctgggtc tgtagtcata cttctggaaa 2700
ttccttttgg ttccaagacg aggaggttcc tctaagatct catggtcctg cttcctccca 2760
gtcccctcac aggacatttt cttcccacag gtggaaaagg agggagctac tctcaggctg 2820
cgtgtaagtg gtgggggtgg gagtgtggag gagctcaccc accccataat tcctcctgtc 2880
ccacgtctcc tgcgggctct gaccaggtcc tgtttttgtt ctactccagc cagcgacagt 2940
gcccagggct ctgatgtgtc tctcacagct tgaaaaggtg agattcttgg ggtctagagt 3000
gggtggggtg gcgggtctgg gggtgggtgg ggcagtgggg aaaggcctgg gtaatggaga 3060
ttctttgatt gggatgtttc gcgtgtgtcg tgggctgttc agagtgtcat cacttaccat 3120
gactaaccag aatttgttca tgactgttgt tttctgtagc ctgagacagc tgtcttgtga 3180
gggaccgaga tgcaggattt cttcacgcct cccctttgtg acttcaagag cctctggcat 3240
ctctttctgc aaaggcacct gaatgtgtct gcgtccctgt tagcataatg tgaggaggtg 3300
gagagacagc ccacccttgt gtccactgtg acccct 3336
//