Dbfetch
ID LR777793; SV 1; linear; genomic DNA; STD; HUM; 7102 BP.
XX
AC LR777793;
XX
PR Project:PRJEB36837;
XX
DT 23-JUL-2020 (Rel. 144, Created)
DT 23-JUL-2020 (Rel. 144, Last updated, Version 1)
XX
DE Homo sapiens, HLA-DQB1 gene for MHC class II antigen, cell line
DE DKMS-LSL_ID16219243_DQB1_1, allele HLA-DQB1*06:new
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RA Albrecht V., Schmidt H. A., Klussmeier A., Lange V., Putke K.;
RT ;
RL Submitted (20-FEB-2020) to the INSDC.
RL DKMS LIFE SCIENCE LAB, Research & Development, St. Petersburger Str. 2,
RL Saxony, 01069 Dresden, Germany
XX
DR MD5; 5f229dbd85894a89b9d8acfc2073d1f5.
XX
FH Key Location/Qualifiers
FH
FT source 1..7102
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /cell_line="DKMS-LSL_ID16219243_DQB1_1"
FT /db_xref="taxon:9606"
FT exon 1..634
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*06:new"
FT /number=1
FT CDS join(526..634,2066..2335,4885..5166,5676..5786,6884..6897)
FT /codon_start=1
FT /transl_table=1
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*06:new"
FT /product="MHC class II antigen"
FT /function="antigen presenting molecule"
FT /protein_id="CAB0472827.1"
FT /translation="MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVYQFKG
FT MCYFTNGTERVRLVTRHIYNREEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTR
FT AELDTVCRHNYEVAFRGILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVQW
FT FRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRA
FT QSESAQSKMLSGVGGFVLGLIFLGLGLIIRQRSQKGLLH"
FT intron 635..2065
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*06:new"
FT /number=1
FT exon 2066..2335
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*06:new"
FT /number=2
FT intron 2336..4884
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*06:new"
FT /number=2
FT exon 4885..5166
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*06:new"
FT /number=3
FT intron 5167..5675
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*06:new"
FT /number=3
FT exon 5676..5786
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*06:new"
FT /number=4
FT intron 5787..6250
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*06:new"
FT /number=4
FT exon 6251..6274
FT /pseudo
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*06:new"
FT /number=5
FT intron 6275..6883
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*06:new"
FT /number=5
FT exon 6884..7102
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*06:new"
FT /number=6
XX
SQ Sequence 7102 BP; 1799 A; 1643 C; 1701 G; 1959 T; 0 other;
ttctaagaac tttgctcttc tccccaggac ttaaggctct tcagcgtgtc taagacaaca 60
gcagtaaaaa tttctgtgac agcaattttc tctcccctga aatatgatcc ccacctaatt 120
tgctttatta aaaatcccaa gtataataac aactggtttt taacaatatt acagagatgt 180
ttactgttga atcgcatttt tttcttttgc ctctcaaaat ccccgaggca ttcgttcttc 240
agctcttcta taatcgagag gaaattttca cctcagatgt tcatccagta caatttgaag 300
acgtcacagt gccaggcact ggattgagaa ccttcacaaa aaaaatgtct gcccagagac 360
agatgaggtc cttcagctcc agtgctgatt ggttcttttc cgagggacca tccaatcctg 420
ccactcacgg aaacatccac aggtttttat tctttctgcc aggtacatca gatccatcag 480
gtccgagctg tgttgactac cactgctttt cccttcgtct cagttatgtc ttggaagaag 540
gctttgcgga tccccggaga ccttcgggta gcaactgtca ccttgatgct ggcgatgctg 600
agctccctac tggctgaggg cagagactct cccggtaagt gcagggcagc tgctctccag 660
agccgccact ctgggaacag gctctccttg ggctggggta tgggggatgg tgatctctat 720
gatcttggac acaatctttc atcaacattt cctctctctt gggaaagaaa gctatgttgc 780
attcccattt atcttttagt gatgagatga ggacaatcca atccccatcc tacaggctta 840
agcctggaag aggaggagag aggagagaaa gaggagataa agtgtacatt tactaccagc 900
gataggacaa agtgagcatg gggttatttt tgaagatatg aatttctcca aagacacagc 960
aggatttgtc atttaggcgt gccccaagac tgcctggact taggattatg agatcctgca 1020
ttggaaaatg tgaggcagca atggtgtctg tagtctctgt atttgaggaa aatttgtctc 1080
tattcctgac cgagtggagc atttgtggag gcaaaatctt ggtgctgagg gaagctgact 1140
ggctgaccac agagagggag tcttcgggtt tcactgattt atgggcaaat ggtgacttga 1200
gtgggattca gagacccgag ttaatggtgg actgaattta gtaggaagga ggatgtaaag 1260
aagggaaata acacatattg tgaaaccact cacttcagac agaacaatac tttatataac 1320
ttctctctca ctccttctaa catcctgtgt gtagatatca tgattttctt ttacacaatt 1380
atacttgtga tatggatatt ctgttacata acctgcccaa actggtgact gccacagttt 1440
aactggaatc tagtttatca aattcaaaag cttgtgctct ttccatgaat aaatgtctct 1500
atctaggact cagaggtgta ggtcctttcc aacatagaag ggagtgaacc tcaacgggac 1560
ttgggaggtt aaatctaggc atgggaagga aggtatttta cccagggacc aagagaatac 1620
gcgtgtcaga acgaggccag gcttaattcc tggacctatc tcgtcattcc gttgaactct 1680
cagatttatg tggataactt tatctctgag gtatccagga gcttcatgaa aaatgggatt 1740
tcatgcgaga acgccctgat ccctctaagt gcagaggtgc atgtaaaatc agcccgactg 1800
cctcttcgct gggttcacag gctcaggcag ggacagggct ttcctccctt tcctggatgt 1860
aggaaggcag attccagaag cccgcaaaga aggcgggcag agctgggcag agccgccggg 1920
aggatcccag gtctggagcg ccaggcacgg gcgggcggga actggaggtc gcgcgggcgg 1980
ttccacagct ccaggccggg tcagggcggc ggctgcgggg gcggccgggc tggggcctga 2040
ctgaccggcc ggtgattccc cgcagaggat ttcgtgtacc agtttaaggg catgtgctac 2100
ttcaccaacg ggacggagcg cgtgcgtctt gtaaccagac acatctataa ccgagaggag 2160
tacgcgcgct tcgacagcga cgtgggggtg taccgcgcgg tgacgccgca ggggcggcct 2220
gatgccgagt actggaacag ccagaaggaa gtcctggagg ggacccgggc ggagttggac 2280
acggtgtgca gacacaacta cgaggtggcg ttccgcggga tcttgcagag gagaggtgag 2340
cgtcgtcgcc cctccgtgag gcccaccctt ggccgagacc ccgagtttct gtgccgggag 2400
gggcgatggg ggcgaggtct ctgaaatctg agcccagttc attccacccc aggggaaagg 2460
aggcggcggc ggggtggtgg gggcaggtgc atcggagggg cggggaccta gggcagagca 2520
gggggacaag cagagttggc caggctgcct agtgtccccc ccagcctccc cgtccgtcgg 2580
cctcgtcctc tgctctgcac gtttctcgcc tcgtgcctta tgcgtttgcc tcctcgtgcc 2640
ttaccttcgc taagcagttc tctctgcccc cagtgcccac cctcttcccc tgcccgccgg 2700
cctcgctagc actgccccac ccagcaaggc ccacgtgcgc agcttgcgcc gcaggaagct 2760
tcaggcttgg cctggtggag ttagggctgc cccacaactg cgcgcagggc atccagcaat 2820
tacagttgca aaataagata ttttgacttt ttggcttcaa atcattattc atcgtaattc 2880
tgttttctta aatggctacc actaatggcg gagatctttg aggcgagaga ctgtttaatt 2940
attgcatgcc tggtacctga cacattgact ggtatgtggt gtgagctcaa tgatcttctg 3000
ttaaattcat gaataaatgt actcagctgc caatccagtt aggttcaaga aaaaaacaga 3060
ggcttacaaa tgaactttat caattatttt ctatcatttt gcttaatgct ttcaagtaaa 3120
ctcttactga cttggatctt aatagaattt gtgaatacaa agtctgagga aaatgtgttt 3180
gctaaaaata aaaacaatgc ttgaatgatg ttgtaaggca gagttttaat ttcttagaaa 3240
agctgaacaa atagcactat gcaaagatca gaagtttggg aataaatagg ttgaagctat 3300
taaattattg gataaaaata gtttcaggtt gcttttggcc taggttatcc cctcctccca 3360
tcactatcca cttcaggaat aaacattctg aaagtcaatt ttacccattc aggaagcact 3420
tatttctaga cagttgcctt atcaaatacc atctatatta tgtcatttaa tctcgcagct 3480
acctgtgcat tagagattag catcaccact ttatatatcc taatattggt acatgataaa 3540
cactttaagt aatcagccca caattactca ccaagatctt aagcctccca aagtacacaa 3600
cattcttatg ttcctcacta cacatctgta gagtctaagg gatgtaaggc cttgttaaag 3660
ccagttttga ccagaagcag caatgagtct attcctgttt gttctccatg ttaatgcggc 3720
attgaaaatt catgattaat caatccctag tctgacccca gtgttatcta tgcaggttca 3780
caaaactttt agtttgcttt acactccctt gccttctttt gactcacatc ctaatgccag 3840
caagtactta tatttttgct atttcagttt tatttccatg aaatttattt tatcatcttt 3900
tctcataaat ttgtgccctc tatttttact cccagtctgt tgaagatgaa caaatcttat 3960
aaggccacat agctgactct gatttcagtt ggcctccagg aaggagaacc taaagaaaag 4020
ttcaagtcca agcagaaacc atgattcctt ccggatgatg gctcaagagt gccatttaat 4080
tggggtgcca cctgctgacc tcagcaaatc ccagttatat gtatatgttc acattacagg 4140
ctcattagcc caggccgacc tctgcacgga tctcagaata ttttctgtgg agaacataca 4200
cgataatgtc tgatttcaga acaagaaagt aattgtcaat agcaaggaaa tggagtaggg 4260
tagacagcta gtaattaaac tcacttgtgc gttaaaaaga aattaaggaa aaaaagaaaa 4320
tgagagaaca tattactaaa taaagaaagc acacattaaa tatttgctat agtttcacac 4380
taagagaata aaggaaatgt gataaagtgg cctaaaaggt aaaggatgag atgtgtaaaa 4440
gaggcgggga aagatgtgtc atttttttta ctatgagcag caatctgaga agataaagga 4500
attgagttgt ggacaaacat gatgtttgat caagggttat ttgttttgaa ggcctgccta 4560
cttttttttc aaatattaca aacttttgaa ataacattct actttttttt caaatattac 4620
aaacttttga aataacattc tttttgtttt ttgctgtctg ttactagatt gcacattcta 4680
taaatgcagg gaccatggta tgttatttat ctttgaattc tcagtgattg tcaaatttat 4740
atttgttgaa tgaaccttaa tccaagactt ggactccagg tatctttcca ctctggtcca 4800
aggagggatc cttcctcatg gtagacgtgg tgtgtgttct cacatctcac tcctatgtct 4860
tttcctgtct gttactgccc tcagtggagc ccacagtgac catctcccca tccaggacag 4920
aggccctcaa ccaccacaac ctgctggtct gctcggtgac agatttctat ccaggccaga 4980
tcaaagtcca gtggtttcgg aatgatcagg aggagacagc cggcgttgtg tccacccccc 5040
ttattaggaa tggtgactgg actttccaga tcctggtgat gctggaaatg actccccagc 5100
gtggagatgt ctacacctgc cacgtggagc accccagcct ccagagcccc atcaccgtgg 5160
agtggcgtaa ggggatattg agtttctgtt actatgggcc cacaagacaa agagctcctt 5220
ctgacccatt ccttcccatc tcttatccct gatgtcacta ctgagctggg aatcacagga 5280
gactagagca cctcttgctc catggcaagt gcatcagaag aatcctggtc tcatcacctt 5340
tccagatgct agggaaatta ctctgcatac tgttgctctg aatcccagtc ctgatagctc 5400
tgagggactg attcttaggg ctggtgactg ggatcttagg gtctaaggtt atggatgagt 5460
tcttgaagag cagagatttg cttccccact ctctcaccta ttcactgtat ccaaggacct 5520
attggctggt ctttcccctc cttaggggtg gtctgaatgg agaactagtt tcctttgatg 5580
ccttcacctt ctgcacctca gactggactt caactcctca gcagggatgc tatggggtgt 5640
ggggacaaac acagacactc agttctgctc tttaggggct cagtctgaat ctgcccagag 5700
caagatgctg agtggcgttg gaggcttcgt gctggggctg atcttccttg ggctgggcct 5760
tatcatccgt caaaggagtc agaaaggtga ggaaccccag gggaaaaggg gaagatgggc 5820
tgtgacccag accctctgtt cagagtggtc ctgtctgtag attagctctt tcctcctcac 5880
cctgagagga agtgcgagga gacaggacaa gatgggagga ggcattggaa tctgatttta 5940
ctggttgaaa ggtagcgctg tcacagagct gactgataga gcttattcca gggcatcctt 6000
accattcatc attgtctcac tggctccttt ccaaaagctt cctccattaa gagggtcaga 6060
gcctcaactt cctttctttc tagtgacaat ttcctttgtt ttaggggatt ttaaattagg 6120
gtgctgaagg cctggaagaa catgggtggg aagagaatgt aactctaagt catgtgtgtc 6180
attttccttt ggggtgagag agtggctgtt tgtgtaatga gacctttctc tgcataactt 6240
ccttttgtaa gacctcaagg gcctccacca gcaggtaata tttcagccat gatccagtgt 6300
gggtaggcac aggtataaga gggaagagca tgagctgagt gtacctgacc acagtggtcc 6360
atgttcatgg cctatttgct gctatgagga tcaagactta ggggagaagt ttgccagttt 6420
ctaggaatct ccagacattg ttccccagaa ccaagcctta actttggtgg catcttcttg 6480
tgaaatgtgg agccagaacc acagcttaaa tgttagacac taggatgatg cccactttgt 6540
gccacatgat ggtggctact gcctgtaggc attttccagt gactgaaaga ggctgctagt 6600
ggtcgggaag agatatcatc caatttccta aaaagactga acccttcata ttccccagaa 6660
gaataacagc tgttccccac ctccctcaca tctgcatcaa gctgaagttc tgtgtcctca 6720
tgagctgatt tcacctttgc acagatcttg ggggaggtga tgacaataca ccctggacct 6780
caactttctc tgtctgaagc tgcagggggc cgctgaaggg tgggggagat ggcaggccca 6840
ccaggatacc ctgtgctgat caatgctctt ctctcttctc cagggcttct gcactgactc 6900
ctgagactat tttaactagg attggttatc actcttctgt gatgcctgct tgtgcctgcc 6960
cagaattccc agctgcctgt gtcagcttgt ccccctgaga tcaaagtcct acagtggctg 7020
tcacgcagcc accaggtcat ctcctttcat ccccacccca aggcgctggc tgtgactctg 7080
cttcctgcac tgacccagag cc 7102
//