Dbfetch
ID LR757816; SV 1; linear; genomic DNA; STD; HUM; 9775 BP.
XX
AC LR757816;
XX
PR Project:PRJEB36452;
XX
DT 28-JAN-2022 (Rel. 144, Created)
DT 28-JAN-2022 (Rel. 144, Last updated, Version 1)
XX
DE Homo sapiens, HLA-DPA1 gene for MHC class II antigen, cell line
DE Barretos_BAR218088_DPA1_1, allele HLA-DPA1*01:new
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RA Cita F R., Stelet N V.;
RT ;
RL Submitted (27-JAN-2020) to the INSDC.
RL INSTITUTO NACIONAL DE CANCER JOSE ALENCAR GOMES DA SILVA, LABORATORIO DE
RL IMUNOGENETICA, 831 EQUADOR ST. SANTO CRISTO, RIO DE JANEIRO/RJ, Brazil
XX
DR MD5; bc049c8e9e3574a61b018092e41b5001.
XX
FH Key Location/Qualifiers
FH
FT source 1..9775
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /cell_line="Barretos_BAR218088_DPA1_1"
FT /db_xref="taxon:9606"
FT exon 1..623
FT /gene="HLA-DPA1"
FT /allele="HLA-DPA1*01:new"
FT /number=1
FT CDS join(524..623,4208..4453,4794..5075,5290..5444)
FT /codon_start=1
FT /transl_table=1
FT /gene="HLA-DPA1"
FT /allele="HLA-DPA1*01:new"
FT /product="MHC class II antigen"
FT /function="antigen presenting molecule"
FT /protein_id="CAA8005785.1"
FT /translation="MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAAFVQ
FT THRPTGEFMFEFDEDEMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTL
FT IQRSNHTQATNDPPEVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGV
FT AESLFLPRTDYSFHKFHYLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTE
FT TVLCALGLVLGLVGIIVGTVLIIKSLRSGHDPRAQGTL"
FT intron 624..4207
FT /gene="HLA-DPA1"
FT /allele="HLA-DPA1*01:new"
FT /number=1
FT exon 4208..4453
FT /gene="HLA-DPA1"
FT /allele="HLA-DPA1*01:new"
FT /number=2
FT intron 4454..4793
FT /gene="HLA-DPA1"
FT /allele="HLA-DPA1*01:new"
FT /number=2
FT exon 4794..5075
FT /gene="HLA-DPA1"
FT /allele="HLA-DPA1*01:new"
FT /number=3
FT intron 5076..5289
FT /gene="HLA-DPA1"
FT /allele="HLA-DPA1*01:new"
FT /number=3
FT exon 5290..9775
FT /gene="HLA-DPA1"
FT /allele="HLA-DPA1*01:new"
FT /number=4
XX
SQ Sequence 9775 BP; 2663 A; 2134 C; 1896 G; 3082 T; 0 other;
ggtggacctg aaagaaagat taattatata ttttattaga tagcacattc attcttaatt 60
atcagcagaa tatttttgta aaatattgac aacataacat aaaacatgat ttaaaatata 120
gtgaccaaaa aacatcaaag atcatctgac tgtctgggat gggggtgggg ctcgggagaa 180
ggaacataat ggaaaacatt tgccgtcaga agaaggtgta acttatcttt ttacatctct 240
ttctctaact ctgaaaatga actgtgaact ggagctctct tgaccacgct ggtacctaaa 300
attctcccat ctcttcccca gcaccttcca gcgtcctctt tacccagcaa cagagaatgt 360
cagctctatg atttctctga taggtgaatc ccagccatgc tgattcctct ccacccattt 420
ccagtgctag aggcccacag tttcagtctc atctgcctcc actcggcctc agttcctcat 480
cactgttcct gtgctcacag tcatcaatta tagaccccac aacatgcgcc ctgaagacag 540
aatgttccat atcagagctg tgatcttgag agccctctcc ttggctttcc tgctgagtct 600
ccgaggagct ggggccatca agggtgagtg ctcaggagga cgcaggagcg tcggggtgag 660
tgatggggtg gttcacatca attgctgctt cagggatcac agattttagg ggctcattga 720
tctatctggt cctcatagtc tatgttccct ctggccctca taataataac agcaataaca 780
gccagaattt atgagactcc tgcatagttt ctttccccat ttacatctca caggaatctt 840
caatgaagat aatattccat tcatttagaa attattcctt ttatttagaa attattttga 900
aaaaactgaa gctcaaaaag atgaataagt tttccaaggt tacacagcag atcaacgagc 960
caagtttgaa gtccagaccc agctctgagg gtcatacact gccttcccca gattcctgca 1020
cacagtgacc tactatcagg gccctcctat ctctctggga tccccagcct ctatcttttg 1080
tggctgcttt acaggaactc cgagctatgg actctgcatt aggagacgaa gtgcaaagag 1140
tgtttctgta tcctccctct cttctaggac cctagggctc ttcctgggtc tttgtgggtg 1200
gtcacaagct ttcctctctc aagacagcag ggttgcatgg tcttgatagc cttgtgattc 1260
gggttctgag agattcagga ctgcaaggga ggcctagact tttgatagct gcaaggactc 1320
agccagagat ggaccgtagt gaatgctcct ttttcctgta gctgaaatca gggagaatga 1380
catcaagcct gtgcatgatg ctgtcattcc aaaatctagt gatggggaag gttagaatcc 1440
ataacgtaca agatgcacac tggcttcaga cagttttatt taagatgtgt agaataaaga 1500
ggaggtcagg ctgggtagaa ccagaagtat ctattgccct gttcgcggtc acctgagtta 1560
tttctaatgt tatgttataa taaacaccac aataggcttc tcttcataga tgcaaatact 1620
ttttagtatt cttggtagaa attcctaatg agctcagctg tctcttcagg gcttccctgc 1680
ccagtctctt aacatttaaa catgtcattt accttaaaaa cataagtgca aaccaactga 1740
taaaaaacaa ccttgccttc agtctgcatc ctgtcccaga gacactttct ttgtgtcctc 1800
acacgtggag ctaagcttct gacttgtctc tggtacatcc ctgaggatcc tctcatcttg 1860
gccatcagga acctctacag aaggtcaaat tcagtgggtt cttctcagtg cctctgactt 1920
gagttactaa taacatttgc actataatcc acttctttct gatgaactac cctgtcctta 1980
tttttctcct gtttacctgg atcctcctta tcatctttta aaccacctct taactatcat 2040
gttctctcat tataccctga gatctcagca attctgattt ttggcactct tcctggaaaa 2100
tcttatttaa cctgcacctg ccactaatga ctctcagttc tatggcctaa attcctctcc 2160
tgagaccacc cataatccac aaatatctat gtattatttc tccttagatg actttcaggt 2220
cttctaagtg caatagcccc acagtaaact cagtatcttc tcccggtcag gctgtcttcc 2280
ctgagagaag tggcttttgc cctgttttct gaatgcctac attgaagcca tctgttcccc 2340
aggaagcctt ccctgatgtg ctgtttggtc gcatcttgtg tatacctacg tatctgcact 2400
tatccttctg aacctgctgt tgtcctgtca cttgtgtttc cttctgtgac ttatacgcgt 2460
ctgcagaaca ggacgtatgt attattttta tttgggtatt tagcatctaa cagtgtttga 2520
catatagtag tcttttaata catatttttg tctgaatgga aatgatattt tgaagaaaaa 2580
taatctgttc catagctggc tgatctttgg actgcagaac ttgtgaaagt gttttttaaa 2640
aagcatttta aaaagtacaa gggacattca tgtattaaga agatgagttt ccaataactg 2700
ctagaggact ttgtgtcttt ttattttacc ctctttttcc tgatgagtcc tttgagtcct 2760
ttaaactgag gagcaagcta agtttcctag tgaaatacct ataggatttg ttttgtttag 2820
tttcaaatac cactctttgc ttggccactt actgtgtcag ggagtcattc tcagtgaaaa 2880
ataagacaca ggtcataccc tctaaacact tacaattaca gtggcaagga gtcattctcc 2940
tgtcactgta agtggccaag cacagactgg gtccccacat gtcagggctg aaaactcaca 3000
gggaaatctg tgagttggga ggtgagagca gaagagtccc gtagttcctt ctcactctga 3060
tgcatttatc attctaaacc cagactttca catacacatt catcgttttc tttcatgata 3120
atagttgctt ttatcctctt atctttgcta attcttacaa actaataaag actaagaaac 3180
aaaataaatt aaatcctaca ggtgttccaa actcagcaat aatttctagt tggcctctaa 3240
aacaaaaatc aaaatataaa tgtaagaaaa gtttagaatg cttagtacct gtgtgatgaa 3300
ataatctgta cactaaaccc ccaagtcatg agtttaccta tacaacaaac ctgcacatgt 3360
actcctgaac ataaaataaa tgttgaaata tttttaaaaa ggaaacaaaa gtttggaaca 3420
aatgccaaaa taactgtact gtacttttga atttatatgc cccaaatgaa aaatattatc 3480
aacaaagcta tacattctac agtttcatgt tcataaacta agacagaaac tttaaaactg 3540
tcaagagccc taaaatttga aggatatttt cttcttcctc tcaattttgt atttttttct 3600
accttttcta taataagaaa aagaaaatgt ccattccccc acccccatga ctctaaaaac 3660
aattttacat ctgtgtcata gaaaaattaa gatcttaatg ggagagaaaa cctctctact 3720
agttccgcca gtagccgtat gaccttagca agttattaat atgtaacttc cctgcatttc 3780
cttacctgta aaatgtatga tatgtatttg cttcataggg ttattgtgac aattcagcga 3840
gtgaaatatg taaagtattt agaaggatgc ctggcacaag taagtgctca acaaatgtta 3900
gctgtcattg ttactattac tattgtgtag ggtcaggatg cccagacttt caaagaccag 3960
gaagcagctt gacttatcag tgataaactt ttcattttgt tctttgctcc tttcttttta 4020
taactgctca tctgctctgt attatttcct ttatggtgtt gctccttctt cttccccata 4080
tgtccttcct ttgacctctt accttcttcc tttttatatt cataagtctt tattcattct 4140
ctagctttga ccacttgcat attcaaactg acattttgtc gtgtttttct ctactgtctt 4200
tatgcagcgg accatgtgtc aacttatgcc gcgtttgtac agacgcatag accaacaggg 4260
gagtttatgt ttgaatttga tgaagatgag atgttctatg tggatctgga caagaaggag 4320
accgtctggc atctggagga gtttggccaa gccttttcct ttgaggctca gggcgggctg 4380
gctaacattg ctatattgaa caacaacttg aataccttga tccagcgttc caaccacact 4440
caggccacca acggtacgcc ctatctttgc ctcttcctct gtagcccaac tggaagggat 4500
gagagggcct ctctgccacc ctcagactag gaagcctaag tgccccctgc tgtgtgatcc 4560
tcttccccta gtggccatgg gctgatccca ctacagcaag ggcttgcatc ctctcttctc 4620
aggagagaga aaggtgagca gagtgaggct ggtcagtggt gtgatacccc tctctgtgat 4680
tcagagctgc cataaaatct aaggctgagg tagaggacca ccctccccta agaggtggag 4740
cctttgtgat tcatcccaga agaggggcct aacctggtgc tgtctccttc cagatccccc 4800
tgaggtgacc gtgtttccca aggagcctgt ggagctgggc cagcccaaca ccctcatctg 4860
ccacattgac aagttcttcc caccagtgct caacgtcacg tggctgtgca acggggagct 4920
ggtcactgag ggtgtcgctg agagcctctt cctgcccaga acagattaca gcttccacaa 4980
gttccattac ctgacctttg tgccctcagc agaggacttc tatgactgca gggtggagca 5040
ctggggcttg gaccagccgc tcctcaagca ctggggtatg caactgcttt tctctccata 5100
atctcctggc atcctctatt ccaaagacct ggtgtcctct gcaccagctt tccgcactgg 5160
ctgggtctca gtcctctcct cgtcctaaca tccaattaac tggtccataa ccttcaattc 5220
ccacaaccat cccaggccat caccaccctc actgcacctc ctgaccctat ctcttcattc 5280
ttcccccaga ggcccaagag ccaatccaga tgcctgagac aacggagact gtgctctgtg 5340
ccctgggcct ggtgctgggc ctagtcggca tcatcgtggg caccgtcctc atcataaagt 5400
ctctgcgttc tggccatgac ccccgggccc aggggaccct gtgaaatact gtaaaggtgg 5460
gaatgtaaag aggaggccct aggatttgta gaatgtaagg aagggaggaa aaattcaatc 5520
tgataagtgt tcattgatct tctaatgggt taaaagcatt cagccacata acaacaacaa 5580
taccgataac taactgagta gttaatatgg tcaggcgcta ttctgaggat ttacatttat 5640
taactcactt tattctcaca catagtcttt gaggtaggta ctattatttt cactatttca 5700
catgagagat acttacatct ttttacatac acagagactt taagcacttt gatcaagttc 5760
ccacagctat gaagtagtag ggctagcttc caatccagaa agtctggatc caagactgtt 5820
tatccactgt cctattcacc ctattttgtg aaggaaaaga ccaagttcaa attctccaga 5880
gtccattgcc aaataatgga gtcagatcta tatttctata cataattaca acacagtgtg 5940
gtgggtgcct gtaactactt actgtctcta cttggactca ttccatggca atgttcacac 6000
aaaaaatgcc cctccagaga tcttacaggt ttctatttat cataacactc accatgcttt 6060
atatttttat atgttttggg aattctctta gcattagaca gtgaacttcc atgcagatga 6120
ccacatctaa ttcattatta ttattgttat tcatgctgga cctcaggtac aaaaggttaa 6180
gaacttctca gttcattata tgatcatcat tggtgcctcc gagctctctc tctctccctt 6240
gatttatttg gtccctttta tctccagtcc ttactcccat atctaacctc ttacccctac 6300
ctcataggta aacattttaa tgaatttgat gtttcctttt atttgcatag atcctctgta 6360
atatgtagta gtgtccagtg tacatgtatt tttaattaac caaaatggca ttaaattata 6420
gatctaattt tgtacatcca gtttgtttct tccaaatctt ccatagtatt ttactttata 6480
tgtccatgca ttagtccatt ttgcattgct ataaaggaat atctgaagtt acctaattta 6540
cgaagaaaag agctttaaat ggctcacaga tctgcaggct gtacgcgaaa catggcacta 6600
gcatctgctt ctgttggggg attctggaag cttttactca tggtggaagg caagtggagc 6660
cagtgcatca catggtcata gagggagaaa gagacataga aagaggtgcc agcctctttt 6720
taacaaccag gtttcatgtg cactaataga gtgagaactc actcattacc cggagagggg 6780
acaaagccat tcatgagggt ctcctccatg attcaaatac ctcccaccag gccccacctg 6840
caacactggg gatcaatttt caacatgaga cttggaagtg acaaatatcc aaatcatatt 6900
aatccacata tctacattgc tcctgggata cctggatcat tcctggttct ctactattgc 6960
aagcaatgct tgtatctcac atggaactgc atatacatgt gggcctgacc tgcatccctg 7020
gaatgtatgt atcctagaaa ggggttgcag ggttgctgga gatgcagctc cttaatttga 7080
ctaaacactg ctcatcttct catcagaatg gctgtactca tctgaacttc ctttgtcagt 7140
actctaattg tcctgcaact cctaaatgga cttcaacact ggacattatc cagttttcta 7200
acttttgcca atttcatgtg cataaagaaa tatgctgttt tattttgcat ttctttaatt 7260
actaataatt ggggctataa ttaggactga ttagccactt gggggttcct tttctataaa 7320
ttgcctgttc acattcattg tccatttttg tactatgtgc ttccatcatt ttcttattga 7380
tttgcaggtg atccttatat agtcctgcta gtagtccctt gtcagtttta ggcattgcaa 7440
atgttttcct ctaatctgac ttctggcaac tgtctccttg gtttccttta ttgaagagaa 7500
atccttaata ttttgtaatg aagtccatca actgtatttt tgtttgtgtg tcttttttaa 7560
aagaagtctt ccctatactg agatatcaaa gatactctta aaacatctcc tacagtttta 7620
aatttcacat ttactacttt aattcatctg ggattcatct ttgtgtttga tggggatcat 7680
gttttatttt tctttatata atgggccagt gtgttcccac aactactaaa tagttcacct 7740
tttccccata ggttagtagt gtctcctttg ctatactgaa agctcccatt ataggtgggc 7800
ctgtgtctga gttccatctt gttccactgt tctgtttgtc tcttcttgtg ccagtgtcct 7860
agtattttga ttactatgac attgtagtgt gtgttagtat ccagtaggac aaattcttgt 7920
ttatttttct tagttcacac acatttataa ttatatctat aatgatttgt aacagagtga 7980
agtgaatgta gaatgtcaga tgttaagagg aagaatggaa aagagggctg ggactagggt 8040
gatgtagggg atgcacctgg cttaggtgca aaatttgggg gataccaaaa gaactcagta 8100
ataaatcata ttttaatgaa atatcttgaa aaggcaaaat taatgcaaag atacatgatt 8160
aacaaaacat ccaaagagga gtatttaaca aaaatggaga agcagagaag cagaagaatt 8220
aggagaatat gctgtcacat gagccaagga attaaagaat tcaggaagga ggaagtactg 8280
ctgtcagatg ttcaacagag gtcattttag aaaatttacc ttggtttttg aaatcctttc 8340
aaagagcagt atacacaatg tgagcaagta tccttcgttc attgccgtca ttgatatggt 8400
ttggatattt gtcccttcca attctcattc cagggttaag cttcttctct gccctcagta 8460
atgtggccct tccccttgtc tgtatatttt ggagacatga agcatgtggg atggcctcac 8520
agtcagctgg ggtttgaggg tgaaattcaa tgactttcgt gaactccttg gctcctatgt 8580
gctcttcacc tggaggacca gggcatgtgc agggatgacc accttctccc tgggacctga 8640
acagggcaga gaaatgggaa gctcgggtgc aaagggagtg gggaagatgg gtccgggctt 8700
acagtactga acccaggaat gacaataact gtgtgtgttg ctgcaggtga caaaatatct 8760
gaacagaaga ggacttagga gagatctgaa ctccagctgc cctacaaact ccatctcagc 8820
ttttcttctc acttcatgtg aaaactactc cagtggctga ctgaattgct gacccttcaa 8880
gctctgtcct tatccattac ctcaaagcag tcattcctta gtaaagtttc caacaaatag 8940
aaattaatga cactttggta gcactaatat ggagattatc ctttcattga gccttttatc 9000
ctctgttctc ctttgaagaa cccctcactg tcaccttccc gagaataccc taagaccaat 9060
aaatacttca gtatttcaga gcggggagac tctgagtcat tcttactgga agtctaggac 9120
caggtcacat gtgaatacta tttcttgaag gtgtggtttc aacctctgtt gccgatgtgg 9180
ttactaaagg ttctgatccc acttgaacgg aaaggtctga ggatattgat tcagtcctgg 9240
gtttttccct aactacagga tagggtgggg tagagaaagg atatttgggg gaaattttac 9300
ttggatgaag attttcttgg atgtagtttg aagactgcag tgtttgaagt ctctgaggga 9360
agagatttgg tctgtctgga tcaagatttc aggcagatta ggattccatt cacagcccct 9420
gagcttcctt cccaaggctg tattgtaatt atagcaatat ttcatggagg atttttctac 9480
atgataaact aagagccaag aaataaaatt tttaaaatgc cctaattcat tgcaattttt 9540
accagccata gtcactccat gtgggagaac ttaaatcatg attaccagag ctttcaaagg 9600
tttgagaata gtgatgatta tgaagaaaaa tatcttattt gagcaaggat tttgtttctt 9660
tatgagtgtt cattagatat tacgatgaaa aaagcatgaa atggtaaaaa ttcagataaa 9720
tataaaaaca tgttctctag ttttttttaa gttaaaaaag gaattgttta aagta 9775
//