Dbfetch
ID LN999683; SV 1; linear; genomic DNA; STD; HUM; 7102 BP. XX AC LN999683; XX DT 15-JAN-2016 (Rel. 127, Created) DT 21-JUL-2017 (Rel. 133, Last updated, Version 2) XX DE Homo sapiens, HLA-DQB1 gene for MHC class II antigen, cell line DE DKMS-LSL-DQB1-981, allele HLA-DQB1*06:new XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-7102 RA Albrecht V.; RT ; RL Submitted (22-DEC-2015) to the INSDC. RL Research and Development, DKMS LIFE SCIENCE LAB, Fiedler Str. 43, Saxony, RL 01307 Dresden, GERMANY. XX RN [2] RX DOI; .1111/tan.13057. RX PUBMED; 28547825. RA Albrecht V., Zweiniger C., Surendranath V., Lang K., Schofl G., Dahl A., RA Winkler S., Lange V., Bohme I., Schmidt A.H.; RT "Dual redundant sequencing strategy: Full-length gene characterisation of RT 1056 novel and confirmatory HLA alleles"; RL HLA. 90(2):79-87(2017). XX DR MD5; d6f6e251703bd426db38a2ad3f139df6. DR IMGT/HLA; HLA-DQB1*06:217; HLA16016. XX FH Key Location/Qualifiers FH FT source 1..7102 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /cell_line="DKMS-LSL-DQB1-981" FT /db_xref="taxon:9606" FT exon 1..634 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=1 FT CDS join(526..634,2066..2335,4885..5166,5676..5786,6884..6897) FT /codon_start=1 FT /transl_table=1 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /product="MHC class II antigen" FT /function="antigen presenting molecule" FT /db_xref="GOA:A0A0U5Q0F9" FT /db_xref="InterPro:IPR000353" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR014745" FT /db_xref="InterPro:IPR036179" FT /db_xref="UniProtKB/TrEMBL:A0A0U5Q0F9" FT /protein_id="CUX91076.1" FT /translation="MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVYQFKG FT MCYFTNGTERVRLVTRHIYNREEYARFDSDVGVYRAVTPQGRPVAEYWNSQKEVLERTR FT AELDTVCRHNYEVGYRGILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVQW FT FRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHRSLQSPITVEWRA FT QSESAQSKMLSGVGGFVLGLIFLGLGLIIRQRSQKGLLH" FT intron 635..2065 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=1 FT exon 2066..2335 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=2 FT intron 2336..4884 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=2 FT exon 4885..5166 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=3 FT intron 5167..5675 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=3 FT exon 5676..5786 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=4 FT intron 5787..6883 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=4 FT exon 6884..7102 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=5 XX SQ Sequence 7102 BP; 1799 A; 1639 C; 1706 G; 1958 T; 0 other; ttctaagaac tttgctcttc tccccaggac ttaaggctct tcagcgtgtc taagacaaca 60 gcagtaaaaa tttctgtgac agcaattttc tctcccctga aatatgatcc ccacctaatt 120 tgctttatta aaaatcccaa gtataataac aactggtttt taacaatatt acagagatgt 180 ttactgttga atcgcatttt tttcttttgc ctctcaaaat ccccgaggca ttcgttcttc 240 agctcttcta taatcgagag gaaattttca cctcagatgt tcatccagta caatttgaag 300 acgtcacagt gccaggcact ggattgagaa ccttcacaaa aaaaatgtct gcccagagac 360 agatgaggtc cttcagctcc agtgctgatt ggttcttttc cgagggacca tccaatcctg 420 ccactcacgg aaacatccac aggtttttat tctttctgcc aggtacatca gatccatcag 480 gtccgagctg tgttgactac cactgctttt cccttcgtct cagttatgtc ttggaagaag 540 gctttgcgga tccccggaga ccttcgggta gcaactgtca ccttgatgct ggcgatgctg 600 agctccctac tggctgaggg cagagactct cccggtaagt gcagggcagc tgctctccag 660 agccgccact ctgggaacag gctctccttg ggctggggta tgggggatgg tgatctctat 720 gatcttggac acaatctttc atcaacattt cctctctctt gggaaagaaa gctatgttgc 780 attcccattt atcttttagt gatgagatga ggacaatcca atccccatcc tacaggctta 840 agcctggaag aggaggagag aggagagaaa gaggagataa agtgtacatt tactaccagc 900 gataggacaa agtgagcatg gggttatttt tgaagatatg aatttctcca aagacacagc 960 aggatttgtc atttaggcgt gccccaagac tgcctggact taggattatg agatcctgca 1020 ttggaaaatg tgaggcagca atggtgtctg tagtttctgt atttgaggaa aatttgtctc 1080 tattcctgac cgagtggagc atttgtggag gcaaaatctt ggtgctgagg gaagctgact 1140 ggctgaccac agagagggag tcttcgggtt tcactgattt atgggcaaat ggtgacttga 1200 gtgggattca gagacccgag ttaatggtgg actgaattta gtaggaagga ggatgtaaag 1260 aagggaaata acacatattg tgaaaccact cacttcagac agaacaatac tttatataac 1320 ttctctctca ctccttctaa catcctgtgt gtagatatca tgattttctt ttacacaatt 1380 atacttgtga tatggatatt ctgttacata acctgcccaa actggtgact gccacagttt 1440 aattggaatc tagtttatca aattcaaaag cttgtgctct ttccatgaat aaatgtctct 1500 atctaggact cagaggtgta ggtcctttcc aacatagaag ggagtgaacc tcaacgggac 1560 ttgggagggt aaatctaggc atgggaagga aggtatttta cccagggacc aagagaatac 1620 gcgtgtcaga acgaggccag gcttaattcc tggacctatc tcgtcattcc gttgaactct 1680 cagatttatg tggataactt tatctctgag gtatccagga gcttcatgaa aaatgggatt 1740 tcatgcgaga acgccctgat ccctctaagt gcagaggtgc atgtaaaatc agcccgactg 1800 cctcttcgct gggttcacag gctcaggcag ggacagggct ttcctccctt tcctggatgt 1860 aggaaggcag attccagaag cccgcaaaga aggcgggcag agctgggcag agccgccggg 1920 aggatcccag gtctggagcg ccaggcacgg gcgggcggga actggaggtc gcgcgggcgg 1980 ttccacagct ccaggccggg tcagggcggc ggctgcgggg gcggccgggc tggggcctga 2040 ctgaccggcc ggtgattccc cgcagaggat ttcgtgtacc agtttaaggg catgtgctac 2100 ttcaccaacg ggacggagcg cgtgcgtctt gtaaccagac acatctataa ccgagaggag 2160 tacgcgcgct tcgacagcga cgtgggggtg taccgggcgg tgacgccgca ggggcggcct 2220 gttgccgagt actggaacag ccagaaggaa gtcctggaga ggacccgggc ggagttggac 2280 acggtgtgca gacacaacta cgaggtgggg taccgcggga tcctgcagag gagaggtgag 2340 cgtcgtcgcc cctccgtgag gcgcaccctt ggccgggacc ccgagtctct gtgccgggag 2400 gggcgatggg ggcgaggtct ctgaaatctg agcccagttc attccacccc aggggaaagg 2460 aggcggcggc ggggtggtgg gggcaggtgc atcggagggg cggggaccta gggcagagca 2520 gggggacaag cagagttggc caggctgcct agtgtccccc ccagcctccc cgtccgtcgg 2580 cctcgtcctc tgctctgcac gtttctcgcc tcgtgcctta tgcgtttgcc tcctcgtgcc 2640 ttaccttcgc taagcagttc tctctgcccc cagtgcccac cctcttcccc tgcccgccgg 2700 cctcgctagc actgccccac ccagcaaggc ccacgtgcgc agcttgcgcc gcaggaagct 2760 tcaggcttgg cctggtggag ttagggctgc cccacaactg cgcgcagggc atccagcaat 2820 tacagttgca aaataagata ttttgacttt ttggcttcaa atcattattc atcgtaattc 2880 tgttttctta aatggctacc actaatggcg gagatctttg aggcgagaga ctgtttaatt 2940 attgcatgcc tggtacctga cacattgact ggtatgtggt gtgagctcaa tgatcttctg 3000 ttaaattcat gaataaatgt actcagctgc caatccagtt aggttcaaga aaaaaacaga 3060 ggcttacaaa tgaactttat caattatttt ctatcatttt gcttaatgct ttcaagtaaa 3120 ctcttactga cttggatctt aatagaattt gtgaatacaa agtctgagga aaatgtgttt 3180 gctaaaaata aaaacaatgc ttgaatgatg ttgtaaggca gagttttaat ttcttagaaa 3240 agctgaacaa atagcactat gcaaagatca gaagtttggg aataaatagg ttgaagctat 3300 taaattattg gataaaaata gtttcaggtt gcttttggcc taggttatcc cctcctccca 3360 tcactatcca cttcaggaat aaacattctg aaagtcaatt ttacccattc aggaagcact 3420 tatttctaga cagttgcctt atcaaatacc atctatatta tgtcatttaa tctcgcagct 3480 acctgtgcat tagagattag catcaccact ttatatatcc taatattggt acatgataaa 3540 cactttaagt aatcagccca caattactca ccaagatctt aagcctccca aagtacacaa 3600 cattcttatg ttcctcacta cacatctgta gagtctaagg gatgtaaggc cttgttaaag 3660 ccagttttga ccagaagcag caatgagtct attcctgttt gttctccatg ttaatgcggc 3720 attgaaaatt catgattaat caatccctag tctgacccca gtgttatcta tgcaggttca 3780 caaaactttt agtttgcttt acactccctt gccttctttt gactcacatc ctaatgccag 3840 caagtactta tatttttgct atttcagttt tatttccatg aaatttattt tatcatcttt 3900 tctcataaat ttgtgccctc tatttttact cccagtctgt tgaagatgaa caaatcttat 3960 aaggccacat agctgactct gatttcagtt ggcctccagg aaggagaacc taaagaaaag 4020 ttcaagtcca agcagaaacc atgattcctt ccggatgatg gctcaagagt gccatttaat 4080 tggggtgcca cctgctgacc tcagcaaatc ccagttatat gtatatgttc acattacagg 4140 ctcattagcc caggccgacc tctgcacgga tctcagaata ttttctgtgg agaacataca 4200 cgataatgtc tgatttcaga acaagaaagt aattgtcaat agcaaggaaa tggagtaggg 4260 tagacagcta gtaattaaac tcacttgtgc gttaaaaaga aattaaggaa aaaaagaaaa 4320 tgagagaaca tattactaaa taaagaaagc acacattaaa tatttgctat agtttcacac 4380 taagagaata aaggaaatgt gataaagtgg cctaaaaggt aaaggatgag atgtgtaaaa 4440 gaggcgggga aagatgtgtc atttttttta ctatgagcag caatctgaga agataaagga 4500 attgagttgt ggacaaacat gatgtttgat caagggttat ttgttttgaa ggcctgccta 4560 cttttttttc aaatattaca aacttttgaa ataacattct actttttttt caaatattac 4620 aaacttttga aataacattc tttttgtttt ttgctgtctg ttactagatt gcacattcta 4680 taaatgcagg gaccatggta tgttatttat ctttgaattc tcagtgattg tcaaatttat 4740 atttgttgaa tgaaccttaa tccaagactt ggactccagg tatctttcca ctctggtcca 4800 aggagggatc cttcctcatg gtagacgtgg tgtgtgttct cacatctcac tcctatgtct 4860 tttcctgtct gttactgccc tcagtggagc ccacagtgac catctcccca tccaggacag 4920 aggccctcaa ccaccacaac ctgctggtct gctcggtgac agatttctat ccaggccaga 4980 tcaaagtcca gtggtttcgg aatgatcagg aggagacagc cggcgttgtg tccacccccc 5040 ttattaggaa tggtgactgg actttccaga tcctggtgat gctggaaatg actccccagc 5100 gtggagatgt ctacacctgc cacgtggagc accgcagcct ccagagcccc atcaccgtgg 5160 agtggcgtaa ggggatattg agtttctgtt actatgggcc cacaagacaa agagctcctt 5220 ctgacccatt ccttcccatc tcttatccct gatgtcacta ctgagctggg aatcacagga 5280 gactagagca cctcttgctc catggcaagt gcatcagaag aatcctggtc tcatcacctt 5340 tccagatgct agggaaatta ctctgcatac tgttgctctg aatcccagtc ctgatagctc 5400 tgagggactg attcttaggg ctggtgactg ggatcttagg gtctaaggtt atggatgagt 5460 tcttgaagag cagagatttg cttccccact ctctcaccta ttcactgtat ccaaggacct 5520 attggctggt ctttcccctc cttaggggtg gtctgaatgg agaactagtt tcctttgatg 5580 ccttcacctt ctgcacctca gactggactt caactcctca gcagggatgc tatggggtgt 5640 ggggacaaac acagacactc agttctgctc tttaggggct cagtctgaat ctgcccagag 5700 caagatgctg agtggcgttg gaggcttcgt gctggggctg atcttccttg ggctgggcct 5760 tatcatccgt caaaggagtc agaaaggtga ggaaccccag gggaaaaggg gaagatgggc 5820 tgtgacccag accctctgtt cagagtggtc ctgtctgtag attagctctt tcctcctcac 5880 cctgagagga agtgcgagga gacaggacaa gatgggagga ggcattggaa tctgatttta 5940 ctggttgaaa ggtagcgctg tcacagagct gactgataga gcttattcca gggcatcctt 6000 accattcatc attgtctcac tggctccttt ccaaaagctt cctccattaa gagggtcaga 6060 gcctcaactt cctttctttc tagtgacaat ttcctttgtt ttaggggatt ttaaattagg 6120 gtgctgaagg cctggaagaa catgggtggg aagagaatgt aactctaagt catgtgtgtc 6180 attttccttt ggggtgagag agtggctgtt tgtgtaatga gacctttctc tgcataactt 6240 ccttttgtaa gacctcaagg gcctccacca gcaggtaata tttcagccat gatccagtgt 6300 gggtaggcac aggtataaga gggaagagca tgagctgagt gtacctgacc acagtggtcc 6360 atgttcatgg cctatttgct gctatgagga tcaagactta ggggagaagt ttgccagttt 6420 ctaggaatct ccagacattg ttccccagaa ccaagcctta actttggtgg catcttcttg 6480 tgaaatgtgg agccagaacc acagcttaaa tgttagacac taggatgatg cccactttgt 6540 gccacatgat ggtggctact gcctgtaggc attttccagt gactgaaaga ggctgctagt 6600 ggtcgggaag agatatcatc caatttccta aaaagactga acccttcata ttccccagaa 6660 gaataacagc tgttccccac ctccctcaca tctgcatcaa gctgaagttc tgtgtcctca 6720 tgagctgatt tcacctttgc acagatcttg ggggaggtga tgacaataca ccctggacct 6780 caactttctc tgtctgaagc tgcagggggc cgctgaaggg tgggggagat ggcaggccca 6840 ccaggatacc ctgtgctgat caatgctctt ctctcttctc cagggcttct gcactgactc 6900 ctgagactat tttaactagg attggttatc actcttctgt gatgcctgct tgtgcctgcc 6960 cagaattccc agctgcctgt gtcagcttgt ccccctgaga tcaaagtcct acagtggctg 7020 tcacgcagcc accaggtcat ctcctttcat ccccacccca aggcgctggc tgtgactctg 7080 cttcctgcac tgacccagag cc 7102 //