Dbfetch
ID LN999577; SV 1; linear; genomic DNA; STD; HUM; 3502 BP.
XX
AC LN999577;
XX
DT 15-JAN-2016 (Rel. 127, Created)
DT 21-JUL-2017 (Rel. 133, Last updated, Version 2)
XX
DE Homo sapiens, HLA-A gene for MHC class I antigen, cell line DKMS-LSL-A-889,
DE allele HLA-A*03:new
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RP 1-3502
RA Albrecht V.;
RT ;
RL Submitted (17-DEC-2015) to the INSDC.
RL Research and Development, DKMS LIFE SCIENCE LAB, Fiedler Str. 43, Saxony,
RL 01307 Dresden, GERMANY.
XX
RN [2]
RX DOI; .1111/tan.13057.
RX PUBMED; 28547825.
RA Albrecht V., Zweiniger C., Surendranath V., Lang K., Schofl G., Dahl A.,
RA Winkler S., Lange V., Bohme I., Schmidt A.H.;
RT "Dual redundant sequencing strategy: Full-length gene characterisation of
RT 1056 novel and confirmatory HLA alleles";
RL HLA. 90(2):79-87(2017).
XX
DR MD5; a2e2afdb02818599ade94f3f4bb06d74.
DR IMGT/HLA; HLA-A*03:267; HLA16074.
XX
FH Key Location/Qualifiers
FH
FT source 1..3502
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /cell_line="DKMS-LSL-A-889"
FT /db_xref="taxon:9606"
FT exon 1..373
FT /gene="HLA-A"
FT /allele="HLA-A*03:new"
FT /number=1
FT CDS join(301..373,504..773,1015..1290,1869..2144,2247..2363,
FT 2806..2838,2981..3028,3198..3202)
FT /codon_start=1
FT /transl_table=1
FT /gene="HLA-A"
FT /allele="HLA-A*03:new"
FT /product="MHC class I antigen"
FT /function="antigen presenting molecule"
FT /db_xref="GOA:A0A0U5Q331"
FT /db_xref="InterPro:IPR001039"
FT /db_xref="InterPro:IPR003006"
FT /db_xref="InterPro:IPR003597"
FT /db_xref="InterPro:IPR007110"
FT /db_xref="InterPro:IPR010579"
FT /db_xref="InterPro:IPR011161"
FT /db_xref="InterPro:IPR011162"
FT /db_xref="InterPro:IPR013783"
FT /db_xref="InterPro:IPR036179"
FT /db_xref="InterPro:IPR037055"
FT /db_xref="UniProtKB/TrEMBL:A0A0U5Q331"
FT /protein_id="CUX90970.1"
FT /translation="MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPR
FT FIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVNLGT
FT LRGYYNQSEAGSHTIQIMYGCDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMA
FT AQITKRKWEAAHEAEQLRAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHE
FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY
FT TCHVQHEGLPKPLTLRWELSSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRK
FT GGSYTQAASSDSAQGSDVSLTACKV"
FT intron 374..503
FT /gene="HLA-A"
FT /allele="HLA-A*03:new"
FT /number=1
FT exon 504..773
FT /gene="HLA-A"
FT /allele="HLA-A*03:new"
FT /number=2
FT intron 774..1014
FT /gene="HLA-A"
FT /allele="HLA-A*03:new"
FT /number=2
FT exon 1015..1290
FT /gene="HLA-A"
FT /allele="HLA-A*03:new"
FT /number=3
FT intron 1291..1868
FT /gene="HLA-A"
FT /allele="HLA-A*03:new"
FT /number=3
FT exon 1869..2144
FT /gene="HLA-A"
FT /allele="HLA-A*03:new"
FT /number=4
FT intron 2145..2246
FT /gene="HLA-A"
FT /allele="HLA-A*03:new"
FT /number=4
FT exon 2247..2363
FT /gene="HLA-A"
FT /allele="HLA-A*03:new"
FT /number=5
FT intron 2364..2805
FT /gene="HLA-A"
FT /allele="HLA-A*03:new"
FT /number=5
FT exon 2806..2838
FT /gene="HLA-A"
FT /allele="HLA-A*03:new"
FT /number=6
FT intron 2839..2980
FT /gene="HLA-A"
FT /allele="HLA-A*03:new"
FT /number=6
FT exon 2981..3028
FT /gene="HLA-A"
FT /allele="HLA-A*03:new"
FT /number=7
FT intron 3029..3197
FT /gene="HLA-A"
FT /allele="HLA-A*03:new"
FT /number=7
FT exon 3198..3502
FT /gene="HLA-A"
FT /allele="HLA-A*03:new"
FT /number=8
XX
SQ Sequence 3502 BP; 667 A; 1014 C; 1067 G; 754 T; 0 other;
caggagcaga ggggtcaggg cgaagtccca gggccccagg cgtggctctc agagtctcag 60
gccccgaagg cggtgtatgg attggggagt cccagccttg gggattcccc aactccgcag 120
tttcttttct ccctctccca acctacgtag ggtccttcat cctggatact cacgacgcgg 180
acccagttct cactcccatt gggtgtcggg tttccagaga agccaatcag tgtcgtcgcg 240
gtcgctgttc taaagcccgc acgcacccac cgggactcag attctcccca gacgccgagg 300
atggccgtca tggcgccccg aaccctcctc ctgctactct cgggggccct ggccctgacc 360
cagacctggg cgggtgagtg cggggtcggg agggaaaccg cctctgcggg gagaagcaag 420
gggccctcct ggcgggggcg caggaccggg ggagccgcgc cgggacgagg gtcgggcagg 480
tctcagccac tgctcgcccc caggctccca ctccatgagg tatttcttca catccgtgtc 540
ccggcccggc cgcggggagc cccgcttcat cgccgtgggc tacgtggacg acacgcagtt 600
cgtgcggttc gacagcgacg ccgcgagcca gaggatggag ccgcgggcgc cgtggataga 660
gcaggagggg ccggagtatt gggaccagga gacacggaat gtgaaggccc agtcacagac 720
tgaccgagtg aacctgggga ccctgcgcgg ctactacaac cagagcgagg ccggtgagtg 780
accccggccg ggggcgcagg tcaggacccc tcatccccca cggacgggcc aggtcgccca 840
cagtctccgg gtccgagatc caccccgaag ccgcgggacc ccgagaccct tgccccggga 900
gaggcccagg cgcctttacc cggtttcatt ttcagtttag gccaaaaatc cccccgggtt 960
ggtcggggct gggcggggct cgggggactg ggctgaccgc ggggtcgggg ccaggttctc 1020
acaccatcca gataatgtat ggctgcgacg tggggtcgga cgggcgcttc ctccgcgggt 1080
accggcagga cgcctacgac ggcaaggatt acatcgccct gaacgaggac ctgcgctctt 1140
ggaccgcggc ggacatggcg gctcagatca ccaagcgcaa gtgggaggcg gcccatgagg 1200
cggagcagtt gagagcctac ctggatggca cgtgcgtgga gtggctccgc agatacctgg 1260
agaacgggaa ggagacgctg cagcgcacgg gtaccagggg ccacggggcg cctccctgat 1320
cgcctgtaga tctcccgggc tggcctccca caaggagggg agacaattgg gaccaacact 1380
agaatatcac cctccctctg gtcctgaggg agaggaatcc tcctgggttc cagatcctgt 1440
accagagagt gactctgagg ttccgccctg ctctctgaca caattaaggg ataaaatctc 1500
tgaaggagtg acgggaagac gatccctcga atactgatga gtggttccct ttgacaccgg 1560
cagcagcctt gggcccgtga cttttcctct caggccttgt tctctgcttc acactcaatg 1620
tgtgtggggg tctgagtcca gcacttctga gtccctcagc ctccactcag gtcaggacca 1680
gaagtcgctg ttcccttctc agggaataga agattatccc aggtgcctgt gtccaggctg 1740
gtgtctgggt tctgtgctct cttccccatc ccgggtgtcc tgtccattct caagatggcc 1800
acatgcgtgc tggtggagtg tcccatgaca gatgcaaaat gcctgaattt tctgactctt 1860
cccgtcagac ccccccaaga cacatatgac ccaccacccc atctctgacc atgaggccac 1920
cctgaggtgc tgggccctgg gcttctaccc tgcggagatc acactgacct ggcagcggga 1980
tggggaggac cagacccagg acacggagct cgtggagacc aggcctgcag gggatggaac 2040
cttccagaag tgggcggctg tggtggtgcc ttctggagag gagcagagat acacctgcca 2100
tgtgcagcat gagggtctgc ccaagcccct caccctgaga tggggtaagg agggagatgg 2160
gggtgtcatg tctcttaggg aaagcaggag cctctctgga gacctttagc agggtcaggg 2220
cccctcacct tcccctcttt tcccagagct gtcttcccag cccaccatcc ccatcgtggg 2280
catcattgct ggcctggttc tccttggagc tgtgatcact ggagctgtgg tcgctgccgt 2340
gatgtggagg aggaagagct caggtggaga aggggtgaag ggtggggtct gagatttctt 2400
gtctcactga gggttccaag ccccagctag aaatgtgccc tgtctcatta ctgggaagca 2460
ccgtccacaa tcatgggcct acccagtctg ggccctgtgt gccagcactt actcttttgt 2520
aaagcacctg ttaaaatgaa ggacagattt atcaccttga ttacggcggt gatgggacct 2580
gatcccagca gtcacaagtc acaggggaag gtccctgagg acagacctca ggagggctat 2640
tggtccagga cccacacctg ctttcttcat gtttcctgat cccgccctgg gtctgcagtc 2700
acacatttct ggaaacttct ctggggtcca agactaggag gttcctctag gaccttaagg 2760
ccctggctcc tttctggtat ctcacaggac attttcttct cacagataga aaaggaggga 2820
gttacactca ggctgcaagt aagtatgaag gaggctgatg cctgaggtcc ttgggatatt 2880
gtgtttggga gcccatgggg gagcccaccc acctcacaat tcctcctcta gccacatctt 2940
ctgtgggatc tgaccaggtt ctgtttttgt tctaccccag gcagtgacag tgcccagggc 3000
tctgatgtgt ccctcacagc ttgtaaaggt gagagcttgg aggacctaat gtgtgttggg 3060
tgttgggcgg aacagtggac acagctgtgc tatggggttt ctttgcattg gatgtattga 3120
gcatgcgatg ggctgtttaa ggtgtgaccc ctcactgtga tggatatgaa tttgttcatg 3180
aatatttttt tctatagtgt gagacagctg ccttgtgtgg gactgagagg caagagttgt 3240
tcctgccctt ccctttgtga cttgaagaac cctgactttg tttctgcaaa ggcacctgca 3300
tgtgtctgtg ttcgtgtagg cataatgtga ggaggtgggg agaccacccc acccccatgt 3360
ccaccatgac cctcttccca cgctgacctg tgctccctcc ccaatcatct ttcctgttcc 3420
agagaggtgg ggctgaggtg tctccatctc tgtctcaact tcatggtgca ctgagctgta 3480
acttcttcct tccctattaa aa 3502
//