Dbfetch
ID LN854613; SV 1; linear; genomic DNA; STD; HUM; 4943 BP.
XX
AC LN854613;
XX
DT 04-JUN-2015 (Rel. 125, Created)
DT 04-JUN-2015 (Rel. 125, Last updated, Version 1)
XX
DE Homo sapiens partial HLA-DQB1 gene for MHC class II antigen, allele
DE HLA-DQB1*03:new, cell line DKMS-LSL-DQB1-475
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RP 1-4943
RA Albrecht V.;
RT ;
RL Submitted (13-MAY-2015) to the INSDC.
RL Research and Development, DKMS LIFE SCIENCE LAB, Fiedler Str. 34, Saxony,
RL 01307 Dresden, GERMANY.
XX
RN [2]
RX DOI; https://doi.org/10.1111/tan.13057.
RX PUBMED; 28547825.
RA Albrecht V., Zweiniger C., Surendranath V., Lang K., Schofl G., Dahl A.,
RA Winkler S., Lange V., Bohme I., Schmidt A.H.;
RT "Dual redundant sequencing strategy: Full-length gene characterisation of
RT 1056 novel and confirmatory HLA alleles";
RL HLA. -:1-9(2017).
XX
DR MD5; d6dc133df24cfad26f8e8eaaa731d4e5.
DR IMGT/HLA; HLA-DQB1*03:01:31; HLA13926.
XX
FH Key Location/Qualifiers
FH
FT source 1..4943
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /cell_line="DKMS-LSL-DQB1-475"
FT /db_xref="taxon:9606"
FT CDS join(<1..270,2900..3181,3699..3809,4295..4318,4930..4943)
FT /codon_start=3
FT /transl_table=1
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*03:new"
FT /product="MHC class II antigen"
FT /function="antigen presenting molecule"
FT /db_xref="GOA:A0A0G4PYW8"
FT /db_xref="InterPro:IPR000353"
FT /db_xref="InterPro:IPR003006"
FT /db_xref="InterPro:IPR003597"
FT /db_xref="InterPro:IPR007110"
FT /db_xref="InterPro:IPR011162"
FT /db_xref="InterPro:IPR013783"
FT /db_xref="InterPro:IPR014745"
FT /db_xref="InterPro:IPR036179"
FT /db_xref="UniProtKB/TrEMBL:A0A0G4PYW8"
FT /protein_id="CRL52709.1"
FT /translation="DFVYQFKAMCYFTNGTERVRYVTRYIYNREEYARFDSDVEVYRAV
FT TPLGPPDAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEAL
FT NHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWTFQILVMLEMTPQHG
FT DVYTCHVEHPSLQNPITVEWRAQSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKGP
FT QGPPPAGLLH"
FT exon 1..270
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*03:new"
FT /number=2
FT intron 271..2899
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*03:new"
FT /number=2
FT exon 2900..3181
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*03:new"
FT /number=3
FT intron 3182..3698
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*03:new"
FT /number=3
FT exon 3699..3809
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*03:new"
FT /number=4
FT intron 3810..4294
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*03:new"
FT /number=4
FT exon 4295..4318
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*03:new"
FT /number=5
FT intron 4319..4929
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*03:new"
FT /number=5
FT exon 4930..4943
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*03:new"
FT /number=6
XX
SQ Sequence 4943 BP; 1276 A; 1141 C; 1153 G; 1373 T; 0 other;
aggatttcgt gtaccagttt aaggccatgt gctacttcac caacgggacg gagcgcgtgc 60
gttatgtgac cagatacatc tataaccgag aggagtacgc acgcttcgac agcgacgtgg 120
aggtgtaccg ggcggtgacg ccgctggggc cgcctgacgc cgagtactgg aacagccaga 180
aggaagtcct ggagaggacc cgggcggagt tggacacggt gtgcagacac aactaccagt 240
tggagctccg cacgaccttg cagcggcgag gtgagcgtcg tcgccccgct gcgaggccca 300
ctcttggccg gggccccgag tctctgcgct aggagggacg aggggggcga agcctctgga 360
acctgagccg cgttcgttcc accccagggg acaggagttg gcggcgtggg tggtggggca 420
ggtgcatagg aggggcaggg acctaggggc agagcagggg tacaggtaga gttggtcaaa 480
ctgcctagtt ttgccccagc cttcccgtcc gtcagcctcg ccctctgctg tgcacgttct 540
cgcctcgtgc cttatgcgtt tgcctcctcg tgccttgcct ttgctaagca gtcctctctg 600
cccccaattt ctgccctctt cccctgcccg cccgccccgc tagcactgcc ccacccagca 660
aggtccacgt gcactgctcg cgccgcagga agcttcaggc ttggcctggt ggagttaggg 720
ctgctccaca actgtgcgca gggcatccag caattacagt tgtgaaataa gatattttga 780
cttttggctt caaattatta ttcatcgtaa ttccgttttc ttaaatggct ctcattcatg 840
gcggagctct ttgaggtgag agtgttttaa tcattttatg gccggtacct gacacattga 900
ctggcatgtg gtataagctc aataatcttc tgttaaatta atgaataaat gtgctcagct 960
gccaatccac ttaggctcaa gaaaaaccag aggtaaacag aaccttaaaa atggactttt 1020
attaattatt ttctatcatt ttgcttaatt ctttaaagta aactcttatt gacttggatc 1080
taaatagttt gtgaatacaa agtctgagga aaaaagtgtt tgctaaaaat aaaaacaaca 1140
cttgaatgat gtttgtaagg cagttttaat ttcttagaaa agctgaacaa atggcacaat 1200
gcaaagagca gaagttttgg aataaataga ttgaagccat taaattattg gataaaaata 1260
gtttcaggtt gcttttggcc taggttctcc cctcccccca tcactatcca cttcaggaat 1320
aaacattctg aaagttaatt ttacccatat agtgagcact tatttctaag ttgccttatc 1380
aaataccatc tatgttatgt catttaatct cgcagttgcc tgtgcattag agattagcat 1440
caccacttta tatatcctaa tattagtaca tgataaacac tttaagtaat cagcccacaa 1500
gtactcacca agaccttaag cctcccaaag tacacaacat tcttacgttc ctcactacac 1560
atctgtagag tcaaagggac ataaagcctt gttaaagcca gttttgacca gaagcagcaa 1620
tggtctcttc ctgtttgatc tccatgttaa tgggacaaaa tgatactttc aaggcattga 1680
aaatttatga ttaatcaatc aaatttatga ttaatcaatc cctagtctga ctccagtgag 1740
attcacaaaa ctttcagttt actttatact cccttgcctt cttttgactc acatcatagt 1800
gccagcaagt acttatattt ttgctatttc agttctattt ccataaaatt tattttatca 1860
tcttttctca taaatttgtg ccctctattt ttactcccaa tctgtgtaag atgaacaaat 1920
cttataagac cacatagctg actgtgattt caggtggact ccaggaagga gaaccaaaga 1980
aaactttcag tctttttaag atgaacaaat cttgtaagtc cccacatagc tgactgtgat 2040
ttcaggtgga ctccaggaag gagaaccaaa gaaaagttca agtccaagca gaaaccgtga 2100
ttccttccgg atgatggctc atgagtgcca tttaattggg gtgccacctg ctgtcctcag 2160
caaatcccag ctatatgtat atgttcgcat tacaggctca ttaacctagg ctgacctctg 2220
caaggatctc agaatatttt ctacagagaa catacatgat aatatctgat tttaggacaa 2280
aaaagtaatt ctcaatagca agggaatgga gtagggtaga cagctagtaa ttaaactcac 2340
ttgtgtgtta aaaataaatt aaggaaaaaa gaaaatgaga gaacatatta ctaaataaag 2400
aaagcataca ttaaatattt actatagttt tacactaaga gaataaagga aatgcaataa 2460
agtggcctga aaggtaaagg atgagatgtg taaaagaggc ggggaaagat gtgtcatttt 2520
ttttttacta tgagcagcaa tctgagaaga taaaggaatc gagttatggg cagacatgat 2580
gtttgatcag tgttatttgt tttcaaggcc tgcctacttt tttttcaaat attacaaact 2640
tttgaagtca cattcttttt gttttttgct gtctgttact agatcgcaca ttctgtaaag 2700
gcagggacca tggtatgttg tttatctttg gattctcagt gattgtcata tttatgtttg 2760
ttgaatgaat cttaatccaa gacttgggct ccaggtatct ttccattctg gttccaagga 2820
gggaccttcc tcacagcagg cgtgctgtgt ggtctcacat ctcactccta tatctttccc 2880
tgtctgttac tgccctcagt ggagcccaca gtgaccatct ccccatccag gacagaggcc 2940
ctcaaccacc acaacctgct ggtctgctca gtgacagatt tctatccagc ccagatcaaa 3000
gtccggtggt ttcggaatga ccaggaggag acaaccggcg ttgtgtccac cccccttatt 3060
aggaacggtg actggacctt ccagatcctg gtgatgctgg aaatgactcc ccagcatgga 3120
gacgtctaca cctgccatgt ggagcacccc agcctccaga accccatcac cgtggagtgg 3180
cgtaagggga tattgagttt ctgttactat gggccccaca agacaaaggg cagagctcat 3240
tctgacccat cccttcccat ctcttatccc tgatgtcact actgagctgg gaatcacagg 3300
agactagagc acttcttcct ccatggcaag tgcatcagaa gaatcctgat ctcatcacct 3360
ttccagatgc tagggaaatt actctacata ctgtttctct ggatcccagt cctgatagct 3420
cggagggact gatcattagg gctggtgact gggatcttag ggtttaaggt tatggatgag 3480
ctcctgagga gtggagatct gcttctccac tctctcacct actcactgta cccaaggacc 3540
tattggctgg cctttcccct cccttagggg tggtctgaat ggaggactag tttcctttga 3600
cgccttcacc tcctgaatct cagactggac ttcagctcct cagcagggat gctatggggt 3660
gtggggacaa acactgacac tcaggctctg cttcttaggg gctcagtctg aatctgccca 3720
gagcaagatg ctgagtggca ttggaggctt cgtgctgggg ctcatcttcc tcgggctggg 3780
ccttattatc catcacagga gtcagaaagg tgaggaaccc caagggaaaa ggggaagatg 3840
ggctgtgacc cagaccctct gttcagagag gtcctgtctc tagatgtggc tctttcctcc 3900
tgaccccgag aggaagaaag ctgagctgga ggtgggagga gacaggacaa gattggagga 3960
ggcattggaa tctgatttta ctagttgaaa ggtagccctg tcacacagct cactgataga 4020
gcttattgaa ggacatcctt acctttcatc attgtctcat tggctccttt ccaaaagctt 4080
cctccattaa gagggtcaga gccttggcct ccttgccttc tagtgacaat ttcctttgtt 4140
ttaggggatt ttaaattagg gtgcttaagg ccttgaagga catgggtggg aagagaatat 4200
aactctaatt aagtcacatg tgtcattttc cattggggtg agagagtggc tgtttgtgta 4260
atgagacctt tctctgcata acttcctttt gtaagacctc aagggcctcc accagcaggt 4320
aatatttcag ccgtgatcca gtgtggggag ggcacagatg taagagggaa gagcatgagc 4380
tgagtgtacc tgaccacagt ggtctccgtt catggtatat ttgctgctat gaggatcaag 4440
acttaggggc gaagtttgcc agtttctagg aatctccaga ggctgttccc cagaaccaag 4500
ccttaacttt ggtggcatct tcctgtgaaa tgtgaagcca gaaccacagc ttaaatgtta 4560
gacactagga tgatgcccac tttgtgccac atgttggtgg ctactgcctg taggcatttt 4620
ccagtgactg aaagaggctg ctagtggtag ggatgaggta tcatccaatt tcctaaaaag 4680
accgaaccct tcatattccc cagaagagta acagctgttc ccccacctcc ctcacatctg 4740
catcaagctg aagttctgtg tcttcatgag ctgatttcac ctttgcacag atcttggggg 4800
aggtgatgac aatacactct ggacctcagc tttgtctgtc tgaagctgca gggggcccct 4860
gaggggtggg ggagatggca ggcccaccag cgtaccctgt gctgatcatc cctcttctct 4920
cttctccagg gctcctgcac tga 4943
//