Dbfetch
ID KU319315; SV 1; linear; genomic DNA; STD; HUM; 4070 BP.
XX
AC KU319315;
XX
DT 27-MAY-2016 (Rel. 128, Created)
DT 27-MAY-2016 (Rel. 128, Last updated, Version 1)
XX
DE Homo sapiens MHC class I antigen (HLA-B) gene, HLA-B*51_02_01e1 allele,
DE complete cds.
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RP 1-4070
RA Barsakis K., Babrzadeh F., Chi A., Mindrinos M.N., Fernandez Vina M.A.;
RT "HLA variation in coding and non-coding gene segments";
RL Unpublished.
XX
RN [2]
RP 1-4070
RA Barsakis K., Babrzadeh F., Chi A., Mindrinos M.N., Fernandez Vina M.A.;
RT ;
RL Submitted (18-DEC-2015) to the INSDC.
RL Stanford Blood Center, Stanford School of Medicine, 3165 Porter Drive, Palo
RL Alto, CA 94304, USA
XX
DR MD5; 3997b395ec7c0e5033783091dc082ce0.
DR IMGT/HLA; HLA-B*51:02:01:01; HLA00346.
XX
CC ##Assembly-Data-START##
CC Assembly Method :: Program in house v. k1.1
CC Sequencing Technology :: Illumina
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1..4070
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:9606"
FT gene <270..>2958
FT /gene="HLA-B"
FT /allele="HLA-B*51_02_01e1"
FT mRNA join(<270..342,472..741,987..1262,1838..2113,2218..2334,
FT 2776..2808,2915..>2958)
FT /gene="HLA-B"
FT /allele="HLA-B*51_02_01e1"
FT /product="MHC class I antigen"
FT CDS join(270..342,472..741,987..1262,1838..2113,2218..2334,
FT 2776..2808,2915..2958)
FT /codon_start=1
FT /gene="HLA-B"
FT /allele="HLA-B*51_02_01e1"
FT /product="MHC class I antigen"
FT /db_xref="GOA:C6K6J1"
FT /db_xref="InterPro:IPR001039"
FT /db_xref="InterPro:IPR003006"
FT /db_xref="InterPro:IPR003597"
FT /db_xref="InterPro:IPR007110"
FT /db_xref="InterPro:IPR010579"
FT /db_xref="InterPro:IPR011161"
FT /db_xref="InterPro:IPR011162"
FT /db_xref="InterPro:IPR013783"
FT /db_xref="InterPro:IPR036179"
FT /db_xref="InterPro:IPR037055"
FT /db_xref="UniProtKB/TrEMBL:C6K6J1"
FT /protein_id="ANG08730.1"
FT /translation="MRVTAPRTVLLLLWGAVALTETWAGSHSMRYFYTAMSRPGRGEPR
FT FIAVGYVDDTQFVRFDSDAASPRTEPRAPWIEQEGPEYWDRNTQIFKTNTQTYRENLRI
FT ALRYYNQSEAGSHTWQTMYGCDVGPDGRLLRGHNQYAYDGKDYIALNEDLSSWTAADTA
FT AQITQRKWEAAREAEQLRAYLEGLCVEWLRRYLENGKETLQRADPPKTHVTHHPVSDHE
FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRY
FT TCHVQHEGLPKPLTLRWEPSSQSTIPIVGIVAGLAVLAVVVIGAVVATVMCRRKSSGGK
FT GGSYSQAASSDSAQGSDVSLTA"
XX
SQ Sequence 4070 BP; 771 A; 1145 C; 1227 G; 927 T; 0 other;
ccaggccccg ggcggggctc tcagggtctc aggctccgag agccttgtct gcattgggga 60
ggcgcagcgt tggggattcc ccactcccac gagtttcact tcttctccca acctatgtcg 120
ggtccttctt ccaggatact cgtgacgcgt ccccatttcc cactcccatt gggtgtcgga 180
tatctagaga agccaatcag tgtcgccggg gtcccagttc taaagtcccc acgcacccac 240
ccggactcag aatctcctca gacgccgaga tgcgggtcac ggcgccccga accgtcctcc 300
tgctgctctg gggggcagtg gccctgaccg agacctgggc cggtgagtgc ggggtcggga 360
gggaaatggc ctctgtgggg aggagcgagg ggaccgcagg cgggggcgca ggacctgagg 420
agccgcgccg ggaggagggt cgggcgggtc tcagcccctc ctcgccccca ggctcccact 480
ccatgaggta tttctacacc gccatgtccc ggcccggccg cggggagccc cgcttcattg 540
cagtgggcta cgtggacgac acccagttcg tgaggttcga cagcgacgcc gcgagtccga 600
ggacggagcc ccgggcgcca tggatagagc aggaggggcc ggagtattgg gaccggaaca 660
cacagatctt caagaccaac acacagactt accgagagaa cctgcggatc gcgctccgct 720
actacaacca gagcgaggcc ggtgagtgac cccggcccgg ggcgcaggtc acgactcccc 780
atcccccacg tacggcccgg gtcgccccga gtctccgggt ccgagatccg cctccctgag 840
gccgcgggac ccgcccagac cctcgaccgg cgagagcccc aggcgcgttt acccggtttc 900
attttcagtt gaggccaaaa tccccgcggg ttggtcgggg cggggcgggg ctcgggggac 960
ggtgctgacc gcggggccgg ggccagggtc tcacacttgg cagacgatgt atggctgcga 1020
cgtggggccg gacgggcgcc tcctccgcgg gcataaccag tacgcctacg acggcaaaga 1080
ttacatcgcc ctgaacgagg acctgagctc ctggaccgcg gcggacaccg cggctcagat 1140
cacccagcgc aagtgggagg cggcccgtga ggcggagcag ctgagagcct acctggaggg 1200
cctgtgcgtg gagtggctcc gcagatacct ggagaacggg aaggagacgc tgcagcgcgc 1260
gggtaccagg ggcagtgggg agccttcccc atctcctata ggtcgccggg gatggcctcc 1320
cacgagaaga ggaggaaaat gggatcagcg ctagaatgtc gccctccctt gaatggagaa 1380
tggcatgagt tttcctgagt ttcctctgag ggccccctct tctctctagg acaattaagg 1440
gatgacgtct ctgaggaaat ggaggggaag acagtcccta gaatactgat caggggtccc 1500
ctttgacccc tgcagcagcc ttgggaaccg tgacttttcc tctcaggcct tgttctctgc 1560
ctcacactca gtgtgtttgg ggctctgatt ccagcacttc tgagtcactt tacctccact 1620
cagatcagga gcagaagtcc ctgttccccg ctcagagact cgaactttcc aatgaatagg 1680
agattatccc aggtgcctgc gtccaggctg gtgtctgggt tctgtgcccc ttccccacac 1740
caggtgtcct gtccattctc aggctggtca catgggtggt cctagggtgt cccatgagag 1800
atgcaaagcg cctgaatttt ctgactcttc ccatcagacc ccccaaagac acacgtgacc 1860
caccaccccg tctctgacca tgaggccacc ctgaggtgct gggccctggg cttctaccct 1920
gcggagatca cactgacctg gcagcgggat ggcgaggacc aaactcagga cactgagctt 1980
gtggagacca gaccagcagg agatagaacc ttccagaagt gggcagctgt ggtggtgcct 2040
tctggagaag agcagagata cacatgccat gtacagcatg aggggctgcc gaagcccctc 2100
accctgagat ggggtaagga gggggatgag gggtcatatc tcttctcagg gaaagcagga 2160
gcccttctgg agcccttcag cagggtcagg gcccctcgtc ttcccctcct ttcccagagc 2220
catcttccca gtccaccatc cccatcgtgg gcattgttgc tggcctggct gtcctagcag 2280
ttgtggtcat cggagctgtg gtcgctactg tgatgtgtag gaggaagagc tcaggtaggg 2340
aaggggtgag gggtggggtc tgggttttct tgtcccactg ggggtttcaa gccccaggta 2400
gaagtgttcc ctgcctcatt actgggaagc agcatccaca caggggctaa cgcagcctgg 2460
gaccctgtgt gccagcactt actcttttgt gcagcacatg tgacaatgaa ggacggatgt 2520
atcaccttga tggttgtggt gttggggtcc tgatttcagc attcatgagt caggggaagg 2580
tccctgctaa ggacagacct taggagggca gttggtccag gacccacact tgctttcctc 2640
gtgtttcctg atcctgcctt gggtctgtag tcatacttct ggaaattcct tttgggtcca 2700
agacgaggag gttcctctaa gatctcatgg ccctgcttcc tcccagtccc ctcacaggac 2760
attttcttcc cacaggtgga aaaggaggga gctactctca ggctgcgtgt aagtggtggg 2820
ggtgggagtg tggaggagct cacccacccc ataattcctc ctgtcccacg tctcctgcgg 2880
gctctgacca ggtcctgttt ttgttctact ccagccagcg acagtgccca gggctctgat 2940
gtgtctctca cagcttgaaa aggtgagatt cttggggtct agagtgggcg gggggggcgg 3000
ggagggggca gaggggaaag gcctgggtaa tggagattct ttgattggga tgtttcgcgt 3060
gtgtcgtggg ctgttcagag tgtcatcact taccatgact aaccagaatt tgttcatgac 3120
tgttgttttc tgtagcctga gacagctgtc ttgtgaggga ctgagatgca ggatttcttc 3180
actcctcccc tttgtgactt caagagcctc tggcatctct ttctgcaaag gcacctgaat 3240
gtgtctgcgt tcctgttagc ataatgtgag gaggtggaga gacagcccac ccttgtgtcc 3300
actgtgaccc ctgttcccat gctgacctgt gtttcctccc cagtcatctt tcttgttcca 3360
gagaggtggg gctggatgtc tccatctctg tctcaacttt atgtgcactg agctgcaact 3420
tcttacttcc ctactgaaaa taagaatctg aatatacatt tgttttctca aatatttgct 3480
atgagaggtt gatggattaa ttaaataagt caattcctgg aatgtgagag agcaaataaa 3540
gacctgagaa ccttccagaa tctgcatgtt cgctgtgctg agtctattgc aggtggggtg 3600
tggagaaggc tgtggggggc cgagtgtgga cagggcctgt gcccagttgt tgttgagccc 3660
atcatgggct ttatgtggtt agtcctcagc tgggtcacct tcactgctcc attgtccttg 3720
tcccttcagt ggaaacttgt ccagtgggag ctgtgaccac agaggctcac acatcgccca 3780
gggtggcccc tgcacacggg ggtctctgtg cattctgaga caaattttca gagccattca 3840
cctcctgccc tgcttctaga gctccttttc tgctctgctc ttctgccctc tctccctgcc 3900
ctggttctag tgatcttggt gctgaatcca atcccaactc atgaatctgt aaagcagagt 3960
ctaatttaga cttacatttg tctgtgaaat tggacccatc atcaaggact gttctttcct 4020
gaagggagaa cctgattgtg tgctgcagtg tgctggggca gggggtgcgg 4070
//