Dbfetch
ID KU319191; SV 1; linear; genomic DNA; STD; HUM; 4318 BP.
XX
AC KU319191;
XX
DT 27-MAY-2016 (Rel. 128, Created)
DT 27-MAY-2016 (Rel. 128, Last updated, Version 1)
XX
DE Homo sapiens MHC class I antigen (HLA-C) gene, HLA-C*07_02_01_01e2 allele,
DE complete cds.
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RP 1-4318
RA Barsakis K., Babrzadeh F., Chi A., Mindrinos M.N., Fernandez Vina M.A.;
RT "HLA variation in coding and non-coding gene segments";
RL Unpublished.
XX
RN [2]
RP 1-4318
RA Barsakis K., Babrzadeh F., Chi A., Mindrinos M.N., Fernandez Vina M.A.;
RT ;
RL Submitted (18-DEC-2015) to the INSDC.
RL Stanford Blood Center, Stanford School of Medicine, 3165 Porter Drive, Palo
RL Alto, CA 94304, USA
XX
DR MD5; bf5f1b201aa03661caec7f3e1ceb1e75.
DR Ensembl-Gn; ENSG00000204525; homo_sapiens.
DR Ensembl-Tr; ENST00000376228; homo_sapiens.
DR IMGT/HLA; HLA-C*07:02:01:15; HLA16827.
XX
CC ##Assembly-Data-START##
CC Assembly Method :: Program in house v. k1.1
CC Sequencing Technology :: Illumina
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1..4318
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:9606"
FT gene <501..>3403
FT /gene="HLA-C"
FT /allele="HLA-C*07_02_01_01e2"
FT mRNA join(<501..573,704..973,1224..1499,2087..2362,2487..2606,
FT 3047..3079,3187..3234,3399..>3403)
FT /gene="HLA-C"
FT /allele="HLA-C*07_02_01_01e2"
FT /product="MHC class I antigen"
FT CDS join(501..573,704..973,1224..1499,2087..2362,2487..2606,
FT 3047..3079,3187..3234,3399..3403)
FT /codon_start=1
FT /gene="HLA-C"
FT /allele="HLA-C*07_02_01_01e2"
FT /product="MHC class I antigen"
FT /db_xref="GOA:Q6R739"
FT /db_xref="InterPro:IPR001039"
FT /db_xref="InterPro:IPR003597"
FT /db_xref="InterPro:IPR007110"
FT /db_xref="InterPro:IPR010579"
FT /db_xref="InterPro:IPR011161"
FT /db_xref="InterPro:IPR011162"
FT /db_xref="InterPro:IPR013783"
FT /db_xref="InterPro:IPR036179"
FT /db_xref="InterPro:IPR037055"
FT /db_xref="UniProtKB/TrEMBL:Q6R739"
FT /protein_id="ANG08607.1"
FT /translation="MRVMAPRALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPR
FT FISVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQADRVSLRN
FT LRGYYNQSEDGSHTLQRMSGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTA
FT AQITQRKLEAARAAEQLRAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHE
FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRY
FT TCHMQHEGLQEPLTLSWEPSSQPTIPIMGIVAGLAVLVVLAVLGAVVTAMMCRRKSSGG
FT KGGSCSQAACSNSAQGSDESLITCKA"
XX
SQ Sequence 4318 BP; 830 A; 1217 C; 1302 G; 969 T; 0 other;
ttattttgct ggatgtagtt taatattacc tgaggtgagg taaggtaagg caaagggtgg 60
gaggcaggga gtccagttca gggacgggga ttccaggagg agaagtgaag gggaaggggc 120
tgggcgcagc cttggggtct ctccctggtt tccacagaca gatccttgtc caggactcag 180
gcacacagtg tgacaaagat gcttggtgta ggagaagagg gatcaggacg aagtcccagg 240
tcccgggcgg ggctctcagg gtctcaggct ccaagggccg tgtctgcatt ggggaggcgc 300
cgcgttgggg attctccact cccctgagtt tcacttctcc caacctgcgt cgggtccttc 360
ttcctgaata ctcatgacgc gtccccaatt cccactccca ttgggtgtcg ggttctagag 420
aagccaatca gcgtctccgc agtcccggtt ctaaagtccc cagtcaccca cccggactca 480
cattctcccc agaggccgag atgcgggtca tggcgccccg agccctcctc ctgctgctct 540
cgggaggcct ggccctgacc gagacctggg cctgtgagtg cggggttggg agggaagcgg 600
cctctgcgga gaggagcgag gggccctccc ggcgagggcg caggacccgg ggagccgcgc 660
agggaggtgg gtcgggcggg tctcagcccc tcctcgcccc caggctccca ctccatgagg 720
tatttcgaca ccgccgtgtc ccggcccggc cgcggagagc cccgcttcat ctcagtgggc 780
tacgtggacg acacgcagtt cgtgcggttc gacagcgacg ccgcgagtcc gagaggggag 840
ccgcgggcgc cgtgggtgga gcaggagggg ccggagtatt gggaccggga gacacagaag 900
tacaagcgcc aggcacaggc tgaccgagtg agcctgcgga acctgcgcgg ctactacaac 960
cagagcgagg acggtgagtg accccggccc ggggcgcagg tcacgacccc tccccatccc 1020
ccacggacgg cccgggtcgc ccagagtctc cccgtctgag atccacccca aggtggatct 1080
gcggaacccg cccagaccct cgaccggaga gagccccagt cgcctttacc cggtttcatt 1140
ttcggtttag gccaaaatcc ccgcgggttg gtcggggcgg ggcggggctc gggggactgg 1200
gctgaccgcg ggggcggggc cagggtctca caccctccag aggatgtctg gctgcgacct 1260
ggggcccgac gggcgcctcc tccgcgggta tgaccagtcc gcctacgacg gcaaggatta 1320
catcgccctg aacgaggacc tgcgctcctg gaccgccgcg gacaccgcgg ctcagatcac 1380
ccagcgcaag ttggaggcgg cccgtgcggc ggagcagctg agagcctacc tggagggcac 1440
gtgcgtggag tggctccgca gatacctgga gaacgggaag gagacgctgc agcgcgcagg 1500
taccaggggc agtggggagc cttccccatc tcctatagat ctcccgggat ggcctcccac 1560
gaggagggga ggaaaatggg atcagcactg gaatatcgcc ctcccttgaa tggagaatgg 1620
catgagtttt cctgagtttc ctctgagggc cccctctgct ctctaggaca attaagggat 1680
gaagtctctg aggaaatgga ggggaagaca gtccctggaa tactgatcag gggtctcctt 1740
tgaccacttt gaccactgca gcagctgtgg tcaggctgct gacctttctc tcaggccttg 1800
ttctctgcct cacactcaat gtgtctgaag gtttgattcc agcttttctg agtcctgcag 1860
cctccactca ggtcaggacc agaagtcgct gttcctccct cagagactag aactttccaa 1920
tgaataggag attatcccag gtgcctgtgt ccaggctggc gtctgggttc tgtgccgcct 1980
tccccacccc aggtgtcctg tccattctca ggatggtcac atgggcgctg ctggagtgtc 2040
ccaagagaga tgcaaagtgt ctgaattttc tgactcttcc cgtcagaacc cccaaagaca 2100
cacgtgaccc accaccccct ctctgaccat gaggccaccc tgaggtgctg ggccctgggc 2160
ttctaccctg cggagatcac actgacctgg cagcgggatg gggaggacca gacccaggac 2220
accgagcttg tggagaccag gccagcagga gatggaacct tccagaagtg ggcagctgtg 2280
gtggtgcctt ctggacaaga gcagagatac acgtgccata tgcagcacga ggggctgcaa 2340
gagcccctca ccctgagctg gggtaaggag gggaatgggg ggtcacatct cttatcagag 2400
aaagcagaag tccttctgga gcccttcagc cgggtcaggg ctgaggcttg ggggtcaggg 2460
cccctcacct tctcctcctt tcccagagcc atcttcccag cccaccatcc ccatcatggg 2520
catcgttgct ggcctggctg tcctggttgt cctagctgtc cttggagctg tggtcaccgc 2580
tatgatgtgt aggaggaaga gctcaggtag ggaaggggtg aagagcgggg tctgggtttt 2640
cttgtcccac tgggagtttc aagccccagg tagaagtgtg ccccgccttg ttactggaag 2700
caccatccac acatgggcca tcccagcctg ggaccctgtg tgccagcact tactcttttg 2760
tgaagcacat gtgacaatga aggacggatg tatcaccttg atgattatgg tgttggggtc 2820
ctgattccag cattcatgag tcaggggaag gtccctgcta aggacagacc ttaggagggc 2880
agttggtcca gaacccacaa ctgctttccc catgtttcct gatcctgccc tgggtctgca 2940
gtcgtagttc tggaaacttc tcttgggtcc aagactagga ggttccccta agatcacatg 3000
gccctgcctc ctcccagtcc cctcataggg cattttcttc ccacaggtgg aaaaggaggg 3060
agctgctctc aggctgcgtg taagtgatgg cggcgggcgt gtggaggagc tcacctactc 3120
cataattcct cttgtcccac atctcctgcg ggctctgacc aggtcttttt ttttgttcta 3180
ccccaggcag caacagtgcc cagggctctg atgagtctct catcacttgt aaaggtgaga 3240
ttctggggag ctgaagtggt cgggggtggg gcagagggaa aaggcctggg taatggggat 3300
tctttgattg ggacgtttcg agtgtgtggt gggccgttca gagtgtcatc gcttaccatg 3360
actgacctga atttgttcat gactattgtg ttctgtagcc tgagacagct gcctgtgtgg 3420
gactgagatg caggatttct tcacacctct cctttgtgac ttcaagagcc tctggcatct 3480
ctttctgcaa aggcacctga atgtgtctgc gttcctgtta gcataatgtg aggaggtgga 3540
gagacagccc acccccgtgt ccaccgtgac ccctgtcccc acactgacct gtgttccctc 3600
cccgatcatc tttcctgttc cagagaggtg gggctggatg tctccatctc tgtctcaaat 3660
tcatggtgca ctgagctgca acttcttact tccctaatga agttaagaac ctgaatataa 3720
atttgtgttc tcaaatattt gctatgaagc gttgatggat taattaaata agtcaattcc 3780
tagaagttga gagagcaaat aaagacctga gaaccttcca gaatttgcat gttcgctgtg 3840
ctgagtctgt tgcaggtggg ggtggggaag gctgtgagga gccgagtgtg gacggggcct 3900
gtgcctagtt gctgttcagt tcttcatggg ctttatgtgg tcagtcctca gctgggtcac 3960
cttcactgct ccattgtcct tgtcccttca gtggaaactt gtccagcgga agctgtgacc 4020
acagaggctc acccatcgcc cagggcagcc cctgcacacg ggagtccctg tgctttctga 4080
gacaaatttt cagacccatt cagctcctgc cctccttcta gggctcctct tctgctttgg 4140
tctcctgccc tctctccgtt ccctgattcc agtgatcttc gtgctgactc caatcccaac 4200
tcatgaatct aaagcagagc ctaatttaga tttgtatttg tttgtaaaat tgggtccata 4260
gtctagaatt gttccttcct gaagagagaa acctgatcgt gtgctgcagt gtgcaggg 4318
//