Dbfetch
ID HG973335; SV 1; linear; genomic DNA; STD; HUM; 2699 BP.
XX
AC HG973335;
XX
DT 17-APR-2014 (Rel. 120, Created)
DT 17-APR-2014 (Rel. 120, Last updated, Version 1)
XX
DE Homo sapiens partial HLA-A gene for MHC class I antigen, cell line
DE DKMS-LSL-A-112, allele HLA-A*03, exons 2-8
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RP 1-2699
RA Albrecht V.;
RT ;
RL Submitted (15-APR-2014) to the INSDC.
RL Albrecht V., Research and Development, DKMS LIFE SCIENCE LAB, Fiedler Str.
RL 34, Saxony, 01307 Dresden, GERMANY.
XX
RN [2]
RX DOI; https://doi.org/10.1111/tan.13057.
RX PUBMED; 28547825.
RA Albrecht V., Zweiniger C., Surendranath V., Lang K., Schofl G., Dahl A.,
RA Winkler S., Lange V., Bohme I., Schmidt A.H.;
RT "Dual redundant sequencing strategy: Full-length gene characterisation of
RT 1056 novel and confirmatory HLA alleles";
RL HLA. -:1-9(2017).
XX
DR MD5; de33d3a6cee607ffd325a940587c01df.
DR IMGT/HLA; HLA-A*03:02:04; HLA11969.
XX
FH Key Location/Qualifiers
FH
FT source 1..2699
FT /organism="Homo sapiens"
FT /chromosome="6"
FT /mol_type="genomic DNA"
FT /cell_line="DKMS-LSL-A-112"
FT /cell_type="blood cells"
FT /db_xref="taxon:9606"
FT CDS join(<1..270,512..787,1366..1641,1744..1860,2303..2335,
FT 2478..2525,2695..2699)
FT /codon_start=3
FT /gene="HLA-A"
FT /allele="HLA-A*03"
FT /product="MHC class I antigen"
FT /function="antigen presenting molecule"
FT /db_xref="GOA:X5MI21"
FT /db_xref="InterPro:IPR001039"
FT /db_xref="InterPro:IPR003006"
FT /db_xref="InterPro:IPR003597"
FT /db_xref="InterPro:IPR007110"
FT /db_xref="InterPro:IPR010579"
FT /db_xref="InterPro:IPR011161"
FT /db_xref="InterPro:IPR011162"
FT /db_xref="InterPro:IPR013783"
FT /db_xref="InterPro:IPR036179"
FT /db_xref="InterPro:IPR037055"
FT /db_xref="UniProtKB/TrEMBL:X5MI21"
FT /protein_id="CDO67978.1"
FT /translation="SHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRME
FT PRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQIMYGCDVGS
FT DGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHVAEQQRAYLDGTC
FT VEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGED
FT QTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWELSSQPTI
FT PIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSLTACKV
FT "
FT exon 1..270
FT /gene="HLA-A"
FT /allele="HLA-A*03"
FT /number=2
FT intron 271..511
FT /gene="HLA-A"
FT /allele="HLA-A*03"
FT /number=2
FT exon 512..787
FT /gene="HLA-A"
FT /allele="HLA-A*03"
FT /number=3
FT intron 788..1365
FT /gene="HLA-A"
FT /allele="HLA-A*03"
FT /number=3
FT exon 1366..1641
FT /gene="HLA-A"
FT /allele="HLA-A*03"
FT /number=4
FT intron 1642..1743
FT /gene="HLA-A"
FT /allele="HLA-A*03"
FT /number=4
FT exon 1744..1860
FT /gene="HLA-A"
FT /allele="HLA-A*03"
FT /number=5
FT intron 1861..2302
FT /gene="HLA-A"
FT /allele="HLA-A*03"
FT /number=5
FT exon 2303..2335
FT /gene="HLA-A"
FT /allele="HLA-A*03"
FT /number=6
FT intron 2336..2477
FT /gene="HLA-A"
FT /allele="HLA-A*03"
FT /number=6
FT exon 2478..2525
FT /gene="HLA-A"
FT /allele="HLA-A*03"
FT /number=7
FT intron 2526..2694
FT /gene="HLA-A"
FT /allele="HLA-A*03"
FT /number=7
FT exon 2695..>2699
FT /gene="HLA-A"
FT /allele="HLA-A*03"
FT /number=8
XX
SQ Sequence 2699 BP; 530 A; 759 C; 829 G; 581 T; 0 other;
gctcccactc catgaggtat ttcttcacat ccgtgtcccg gcccggccgc ggggagcccc 60
gcttcatcgc cgtgggctac gtggacgaca cgcagttcgt gcggttcgac agcgacgccg 120
cgagccagag gatggagccg cgggcgccgt ggatagagca ggaggggccg gagtattggg 180
accaggagac acggaatgtg aaggcccagt cacagactga ccgagtggac ctggggaccc 240
tgcgcggcta ctacaaccag agcgaggccg gtgagtgacc ccggccgggg gcgcaggtca 300
ggacccctca tcccccacgg acgggccagg tcgcccacag tctccgggtc cgagatccac 360
cccgaagccg cgggaccccg agacccttgc cccgggagag gcccaggcgc ctttacccgg 420
tttcattttc agtttaggcc aaaaatcccc ccgggttggt cggggctggg cggggctcgg 480
gggactgggc tgaccgcggg gtcggggcca ggttctcaca ccatccagat aatgtatggc 540
tgcgacgtgg ggtcggacgg gcgcttcctc cgcgggtacc ggcaggacgc ctacgacggc 600
aaggattaca tcgccctgaa cgaggacctg cgctcttgga ccgcggcgga catggcggct 660
cagatcacca agcgcaagtg ggaggcggcc cacgtggcgg agcagcagag agcctacctg 720
gatggcacgt gcgtggagtg gctccgcaga tacctggaga acgggaagga gacgctgcag 780
cgcacgggta ccaggggcca cggggcgcct ccctgatcgc ctgtagatct cccgggctgg 840
cctcccacaa ggaggggaga caattgggac caacactaga atatcaccct ccctctggtc 900
ctgagggaga ggaatcctcc tgggttccag atcctgtacc agagagtgac tctgaggttc 960
cgccctgctc tctgacacaa ttaagggata aaatctctga aggagtgacg ggaagacgat 1020
ccctcgaata ctgatgagtg gttccctttg acaccggcag cagccttggg cccgtgactt 1080
ttcctctcag gccttgttct ctgcttcaca ctcaatgtgt gtgggggtct gagtccagca 1140
cttctgagtc cctcagcctc cactcaggtc aggaccagaa gtcgctgttc ccttctcagg 1200
gaatagaaga ttatcccagg tgcctgtgtc caggctggtg tctgggttct gtgctctctt 1260
ccccatcccg ggtgtcctgt ccattctcaa gatggccaca tgcgtgctgg tggagtgtcc 1320
catgacagat gcaaaatgcc tgaattttct gactcttccc gtcagacccc cccaagacac 1380
atatgaccca ccaccccatc tctgaccatg aggccaccct gaggtgctgg gccctgggct 1440
tctaccctgc ggagatcaca ctgacctggc agcgggatgg ggaggaccag acccaggaca 1500
cggagctcgt ggagaccagg cctgcagggg atggaacctt ccagaagtgg gcggctgtgg 1560
tggtgccttc tggagaggag cagagataca cctgccatgt gcagcatgag ggtctgccca 1620
agcccctcac cctgagatgg ggtaaggagg gagatggggg tgtcatgtct cttagggaaa 1680
gcaggagcct ctctggagac ctttagcagg gtcagggccc ctcaccttcc cctcttttcc 1740
cagagctgtc ttcccagccc accatcccca tcgtgggcat cattgctggc ctggttctcc 1800
ttggagctgt gatcactgga gctgtggtcg ctgccgtgat gtggaggagg aagagctcag 1860
gtggagaagg ggtgaagggt ggggtctgag atttcttgtc tcactgaggg ttccaagccc 1920
cagctagaaa tgtgccctgt ctcattactg ggaagcaccg tccacaatca tgggcctacc 1980
cagtctgggc cctgtgtgcc agcacttact cttttgtaaa gcacctgtta aaatgaagga 2040
cagatttatc accttgatta cggcggtgat gggacctgat cccagcagtc acaagtcaca 2100
ggggaaggtc cctgaggaca gacctcagga gggctattgg tccaggaccc acacctgctt 2160
tcttcatgtt tcctgatccc gccctgggtc tgcagtcaca catttctgga aacttctctg 2220
gggtccaaga ctaggaggtt cctctaggac cttaaggccc tggctccttt ctggtatctc 2280
acaggacatt ttcttctcac agatagaaaa ggagggagtt acactcaggc tgcaagtaag 2340
tatgaaggag gctgatgcct gaggtccttg ggatattgtg tttgggagcc catgggggag 2400
cccacccacc tcacaattcc tcctctagcc acatcttctg tgggatctga ccaggttctg 2460
tttttgttct accccaggca gtgacagtgc ccagggctct gatgtgtccc tcacagcttg 2520
taaaggtgag agcttggagg acctaatgtg tgttgggtgt tgggcggaac agtggacaca 2580
gctgtgctat ggggtttctt tgcattggat gtattgagca tgcgatgggc tgtttaaggt 2640
gtgacccctc actgtgatgg atatgaattt gttcatgaat atttttttct atagtgtga 2699
//