Dbfetch
ID FM200854; SV 1; linear; genomic DNA; STD; HUM; 652 BP. XX AC FM200854; XX DT 30-JUL-2008 (Rel. 96, Created) DT 09-JUN-2009 (Rel. 101, Last updated, Version 3) XX DE Homo sapiens partial HLA-DQB1 gene for MHC class II antigen, HLA-DQB1*03 DE variant allele MVE0408, exons 2-3 XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-652 RA Horn P.; RT ; RL Submitted (22-JUL-2008) to the INSDC. RL Horn P., Institute for Transfusion Medicine, Hannover Medical School, RL Carl-Neuberg-Str. 1, Hannover, 30625, GERMANY. XX RN [2] RX DOI; 10.1111/j.1399-0039.2009.01231.x. RX PUBMED; 19493242. RA Wienzek S., Verboom M., Blasczyk R., Bein G., Horn P.A.; RT "DQB1*0323 is the result of a gene conversion event between a DQB1*06 and a RT DQB1*030303 allele"; RL Tissue Antigens 73(6):624-625(2009). XX DR MD5; c61979418418042a9e177b9663535a19. DR Ensembl-Gn; ENSG00000225824; homo_sapiens. DR Ensembl-Gn; ENSG00000231286; homo_sapiens. DR Ensembl-Gn; ENSG00000233209; homo_sapiens. DR Ensembl-Tr; ENST00000399088; homo_sapiens. DR Ensembl-Tr; ENST00000413089; homo_sapiens. DR Ensembl-Tr; ENST00000416192; homo_sapiens. DR Ensembl-Tr; ENST00000419914; homo_sapiens. DR Ensembl-Tr; ENST00000422950; homo_sapiens. DR Ensembl-Tr; ENST00000424806; homo_sapiens. DR IMGT/HLA; HLA-DQB1*03:23:01; HLA03451. XX FH Key Location/Qualifiers FH FT source 1..652 FT /organism="Homo sapiens" FT /map="6p21.3" FT /isolate="MHHI-633843" FT /mol_type="genomic DNA" FT /tissue_type="peripheral blood" FT /db_xref="taxon:9606" FT CDS join(<1..270,371..>652) FT /codon_start=3 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03 variant allele MVE0408" FT /product="MHC class II antigen" FT /db_xref="GOA:P01920" FT /db_xref="HGNC:HGNC:4944" FT /db_xref="InterPro:IPR000353" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR014745" FT /db_xref="InterPro:IPR036179" FT /db_xref="PDB:1JK8" FT /db_xref="PDB:1NBN" FT /db_xref="PDB:1S9V" FT /db_xref="PDB:1UVQ" FT /db_xref="PDB:2NNA" FT /db_xref="PDB:4GG6" FT /db_xref="PDB:4OZF" FT /db_xref="PDB:4OZG" FT /db_xref="PDB:4OZH" FT /db_xref="PDB:4OZI" FT /db_xref="UniProtKB/Swiss-Prot:P01920" FT /protein_id="CAR31119.1" FT /translation="DFVYQFKGMCYFTNGTERVRLVTRYIYNREEYARFDSDVGVYRAV FT TPQGRPDAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEAL FT NHHNLLXCSVTDFYPXQIKVRWFRNDQEETXGVVSTPLIRNGDWTFQILVMLEMTPQRG FT DVYTCHVEHPSLQXPIXVEW" FT exon 1..270 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03 variant allele MVE0408" FT /number=2 FT gap 271..370 FT /estimated_length=unknown FT exon 371..652 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03 variant allele MVE0408" FT /number=3 XX SQ Sequence 652 BP; 122 A; 159 C; 164 G; 96 T; 111 other; aggatttcgt gtaccagttt aagggcatgt gctacttcac caacgggacg gagcgcgtgc 60 gtcttgtgac cagatacatc tataaccgag aggagtacgc gcgcttcgac agcgacgtgg 120 gggtgtaccg cgcggtgacg ccgcaggggc ggcctgatgc cgagtactgg aacagccaga 180 aggaagtcct ggagaggacc cgggcggagt tggacacggt gtgcagacac aactaccagt 240 tggagctccg cacgaccttg cagcggcgag nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 300 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 360 nnnnnnnnnn tggagcccac agtgaccatc tccccatcca ggacagaggc cctcaaccac 420 cacaacctgc tgrtctgctc rgtgacagat ttctatccar sccagatcaa agtccggtgg 480 tttcggaatg aycaggagga gacarcyggc gttgtgtcca cccccctyat taggaacggt 540 gactggacct tccagatcct ggtgatgctg gaaatgactc cccagcgtgg agaygtctac 600 acctgccacg tggagcaccc cagcctccag arccccatca ycgtggagtg gc 652 //