Dbfetch
ID AK154064; SV 1; linear; mRNA; HTC; MUS; 1577 BP. XX AC AK154064; XX DT 06-SEP-2005 (Rel. 85, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 11) XX DE Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length DE enriched library, clone:E430031K17 product:CD3 antigen, delta polypeptide, DE full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-1577 RA Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., RA Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., RA Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K., RA Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., RA Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.; RT ; RL Submitted (30-MAR-2004) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; 5102d197197d263bd4f71ded6715a9fe. DR Ensembl-Gn; ENSMUSG00000032094; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0034725; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0034706; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0034633; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0034697; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0034408; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0035218; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0033730; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0034380; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0034539; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0034480; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0034620; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0034524; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0035239; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0033435; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0033843; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000034602; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0092108; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0092180; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0092132; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0092104; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0091681; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0092637; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0092278; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0091614; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0091823; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0091658; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0091835; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0091666; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0092950; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0091706; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0090707; mus_musculus_wsbeij. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=E430031K17 XX FH Key Location/Qualifiers FH FT source 1..1577 FT /organism="Mus musculus" FT /strain="NOD" FT /mol_type="mRNA" FT /dev_stage="2 days neonate" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="E430031K17" FT /cell_type="thymic cells" FT /tissue_type="thymus" FT /db_xref="taxon:10090" FT CDS 63..584 FT /codon_start=1 FT /transl_table=1 FT /note="CD3 antigen, delta polypeptide (MGD|MGI:88331 FT GB|X02339, evidence: BLASTN, 100%, match=569)" FT /note="putative" FT /db_xref="GOA:Q3U4T1" FT /db_xref="InterPro:IPR003110" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR015484" FT /db_xref="InterPro:IPR015485" FT /db_xref="InterPro:IPR032052" FT /db_xref="InterPro:IPR036179" FT /db_xref="MGI:MGI:88331" FT /db_xref="UniProtKB/TrEMBL:Q3U4T1" FT /protein_id="BAE32350.1" FT /translation="MEHSGILASLILIAVLPQGSPFKIQVTEYEDKVFVTCNTSVMHLD FT GTVEGWFAKNKTLNLGKGVLDPRGIYLCNGTEQLAKVVSSVQVHYRMCQNCVELDSGTM FT AGVIFIDLIATLLLALGVYCFAGHETGRPSGAAEVQALLKNEQLYQPLRDREDTQYSRL FT GGNWPRNKKS" FT regulatory 1549..1554 FT /note="putative" FT /regulatory_class="polyA_signal_sequence" FT polyA_site 1577 FT /note="putative" XX SQ Sequence 1577 BP; 381 A; 370 C; 421 G; 405 T; 0 other; ggctaaccct ggctgatcat cctgtggctt gcctctattt gttgcatgat tccctctgga 60 agatggaaca cagcgggatt ctggctagtc tgatactgat tgctgttctc ccccaaggga 120 gccccttcaa gatacaagtg accgaatatg aggacaaagt atttgtgacc tgcaatacca 180 gcgtcatgca tctagatgga acggtggaag gatggtttgc aaagaataaa acactcaact 240 tgggcaaagg cgttctggac ccacgaggga tatatctgtg taatgggaca gagcagctgg 300 caaaggtggt gtcttctgtg caagtccatt accgaatgtg ccagaactgt gtggagctag 360 actcgggcac catggctggt gtcatcttca ttgacctcat cgcaactctg ctcctggctt 420 tgggcgtcta ctgctttgca ggacatgaga ccggaaggcc ttctggggct gctgaggttc 480 aagcactgct gaagaatgag cagctgtatc agcctcttcg agatcgtgaa gatacccagt 540 acagccgtct tggagggaac tggccccgga acaagaaatc ttaagatgga ggtttctcaa 600 agtgccatag caacggcgcc ttcccctgtg atcaaccaat aaagacgttt ccttccgtcg 660 gcaggcgcct gtgttttcca aagcatggat tgagagttgt cttagcttgg ctgagttctg 720 cccacccgtg gcccctcact tctggcttcc tctcctcaga cccagacagg cagtacgagg 780 gacagcttcc catcctggcc ccttggcatt tctaaccctg tgggtttcct gtgggcaggg 840 tcagcccagc cactctgctt cattgcctgt tggttccagt ccctatcata acaacttccg 900 ggattttgct gccttaccac agcccaaagc aggctgtggt gtttagaagc tgagccacaa 960 agaagtttcc atgacatcat gaatgggggt ggcagagaag aatattgggg ctcaaagggt 1020 gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgaga gagagagaga gagagagaga 1080 gagagagaga cagacagaga gacagagaga cagaaagaca gaaagacaga aagacagaga 1140 cagagctgtc aagaattttc ttctcacttc gtgggttctg gggattgtac taaggtcatg 1200 aggcttgtgt ggcaagcacc cttacccact gagccatctt gcctgccctc atcctcaaat 1260 taattaaaaa taaagaacat gatgaattcc aggtgtttct ggcagtgttg cctgactcac 1320 acggtggaaa ttcattcagc tttggtctcg aacagtgctt gctctaaggc gcttgtccac 1380 ggccagacca cccagcagca gctgagaact gccaggcttg agacttgtgt gctgtgctat 1440 gaactgcact gttcttattg tacagtttcc tgttggtgtg gaaacatagt ggtttcctat 1500 ggaaacaaag acttctaata ttttcccatc ctccctcagc atgtaagtat taaattagta 1560 caccccggtg ctgtgtt 1577 //