Dbfetch
ID AK154055; SV 1; linear; mRNA; HTC; MUS; 1439 BP. XX AC AK154055; XX DT 06-SEP-2005 (Rel. 85, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 11) XX DE Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length DE enriched library, clone:E430030F23 product:CD8 antigen, beta chain, full DE insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-1439 RA Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., RA Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., RA Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K., RA Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., RA Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.; RT ; RL Submitted (30-MAR-2004) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; aeb15d4f225e8f8cf15c59b580d95d1a. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=E430030F23 XX FH Key Location/Qualifiers FH FT source 1..1439 FT /organism="Mus musculus" FT /strain="NOD" FT /mol_type="mRNA" FT /dev_stage="2 days neonate" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="E430030F23" FT /cell_type="thymic cells" FT /tissue_type="thymus" FT /db_xref="taxon:10090" FT CDS 26..667 FT /codon_start=1 FT /transl_table=1 FT /note="CD8 antigen, beta chain (MGD|MGI:88347 GB|AK087944, FT evidence: BLASTN, 99%, match=1429)" FT /note="putative" FT /db_xref="GOA:Q8BH77" FT /db_xref="InterPro:IPR003599" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR013106" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR036179" FT /db_xref="InterPro:IPR042414" FT /db_xref="MGI:MGI:88347" FT /db_xref="UniProtKB/TrEMBL:Q8BH77" FT /protein_id="BAE32345.1" FT /translation="MQPWLWLVFSMKLAALWSSSALIQTPSSLLVQTNHTAKMSCEVKS FT ISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSSRPFLSI FT MNVKPEDSDFYFCATVGSPKMVFGTGTKLTVVDVLPTTAPTKKTTLKMKKKKQCPFPHP FT ETQKGLTCSLTTLSLLVVCILLLLAFLGVAVYFYCVRRRARIHFMKQFHK" XX SQ Sequence 1439 BP; 360 A; 383 C; 351 G; 345 T; 0 other; gaacagtgtc cccaaaagcg ccaagatgca gccatggctc tggctggtct tcagtatgaa 60 gctggcagct ctctggagca gctctgccct cattcagacc ccttcgtccc tgctggttca 120 aaccaaccat acggcaaaga tgtcctgtga ggttaaaagc atctctaagt taacaagcat 180 ctactggctg cgggagcgcc aggaccccaa ggacaagtac tttgagttcc tggcctcctg 240 gagttcttcc aaaggagttt tgtatggtga aagtgtggac aagaaaagaa atataattct 300 tgagtcttca gactcaagcc ggccctttct cagtatcatg aatgtgaagc cagaggacag 360 tgacttctac ttctgcgcga cggttgggag ccccaagatg gtctttggga cagggacgaa 420 gctgactgtg gttgatgtcc ttcctacaac tgccccaacc aagaagacta ccctgaagat 480 gaagaagaag aagcaatgcc cgttccccca cccagagacc cagaagggcc tgacatgcag 540 ccttaccacc ctcagcctgc tggtagtctg catcctgctt ctgctggcat tcctcggagt 600 ggccgtctac ttttactgtg tgcggaggag agcccgaatt cacttcatga aacagtttca 660 caaatgatca gcgcccacaa cactgatagc ctgctagcaa taaaaggact gtaactcaat 720 caaagcaaga tctggactag tgagagacag cgcattcagg actggagagg cccttgccct 780 tgctcaagct gcctgctttg aactgctgca agctctgtgt gtggtttggg gtctcacaag 840 gaaggcctca gaacccaagc tcacgcacag agtggctgaa gaaccaagaa ctcccacgcc 900 accatgtact cttcttggac tgggccttgg acagtggcct tccagccact gtctttgtca 960 gttgcttggt aggacagcct tattgactct ttggcctttc atggaaaaga gctagccggg 1020 cagccctgga gaagactgca aatcctcaca cagagaagcc acctcatgaa taaggtttcc 1080 tgcaaacagt ttctgggctc tcagcagcca tcttactttc tcaggccttg ccgtgggttt 1140 gggaggccgt tggctcagga gacagacttc tacttcatct cctagtagga agtttcttaa 1200 gcttcacttc ttctctctcg tggcttatat atttcttctc tcactctctg cccttttaat 1260 gaaaatgttt tggctataaa aataaagtcc tgccgggcat ggtggtgcat gcctttaatc 1320 ccagcactca ggaggcagag gcaggcggat ctctgagttc gaggccagcc tggtctacag 1380 agtgagttcc aggacagcca aggctacaga gaaaccctgt ctcaaaaaaa cacaaaaac 1439 //