Dbfetch
ID HLA01555; SV 3; standard; DNA; HUM; 4302 BP.
XX
AC HLA01555;
XX
SV HLA01555.3
XX
DT 20-DEC-2001 (Rel. 1.15.0, Created, Version 1)
DT 20-JAN-2020 (Rel. 3.39.0, Last Updated, Version 3)
XX
DE HLA-C*01:06, Human MHC Class I sequence
XX
KW Human MHC; HLA; Class I; HLA-C; Allele; HLA-C*01:06;
XX
OS Homo Sapiens (human)
OC Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria; Primates;
OC Catarrhini; Hominidae; Homo.
XX
CC --------------------------------------------------------------------------
CC IPD-IMGT/HLA Release Version 3.57.0
CC --------------------------------------------------------------------------
CC Copyrighted by the IPD-IMGT/HLA Database, Distributed under the Creative
CC Commons Attribution-NoDerivs License, see;
CC http://www.ebi.ac.uk/ipd/imgt/hla/licence/ for further details.
CC --------------------------------------------------------------------------
CC The sequence below is the official allele sequence as approved by the
CC WHO Nomenclature Committee for Factors of the HLA System.
CC Any cross references may differ from the sequence shown below.
CC --------------------------------------------------------------------------
XX
RN [1]
RP 1-4302
RX PUBMED; 12144631.
RA Wu S, Lai CY, Lai SM, Chen SP, Chou FC, Shiao YM, Huang CS;
RT "Point mutation in the alpha helix of the HLA-C alpha2 domain generates a
RT novel HLA-C allele, HLA-Cw*0106, in a Han Chinese individual in Taiwan.";
RL Tissue Antigens 59:433-435(2002).
XX
DR EMBL; AJ418708; AJ418708.1.
DR EMBL; AJ418709; AJ418709.1.
DR EMBL; FJ842962; FJ842962.1.
DR EMBL; GQ304758; GQ304758.2.
DR EMBL; MN640634; MN640634.1.
DR EMBL; MN938852; MN938852.1.
XX
FH Key Location/Qualifiers
FH
FT source 1..4302
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:9606"
FT /ethnic="Asian, Undefined"
FT /cell_line="BY00451"
FT /cell_line="BY01975"
FT /cell_line="BY02136"
FT /cell_line="SWC231"
FT /cell_line="SZ-28"
FT CDS join(495..567,698..967,1214..1489,2077..2352,2474..2593,
FT 3033..3065,3173..3220,3385..3389)
FT /codon_start=1
FT /gene="HLA-C"
FT /allele="HLA-C*01:06"
FT /product="MHC Class I HLA-C*01:06 sequence"
FT /translation="MRVMAPRTLILLLSGALALTETWACSHSMKYFFTSVSRPGRGEPR
FT FISVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRN
FT LRGYYNQSEAGSHTLQWMCGCDLGPDGRLLRGYDQYAYDGKDYIALNEDLRSWTAADTA
FT AQITQRKWEAARVAEQRRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHPVSDHE
FT ATLRCWALGFYPAEITLTWQWDGEDQTQDTELVETRPAGDGTFQKWAAVMVPSGEEQRY
FT TCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCRRKSSGG
FT KGGSCSQAASSNSAQGSDESLIACKA"
FT UTR 1..494
FT exon 495..567
FT /number="1"
FT intron 568..697
FT /number="1"
FT exon 698..967
FT /number="2"
FT intron 968..1213
FT /number="2"
FT exon 1214..1489
FT /number="3"
FT intron 1490..2076
FT /number="3"
FT exon 2077..2352
FT /number="4"
FT intron 2353..2473
FT /number="4"
FT exon 2474..2593
FT /number="5"
FT intron 2594..3032
FT /number="5"
FT exon 3033..3065
FT /number="6"
FT intron 3066..3172
FT /number="6"
FT exon 3173..3220
FT /number="7"
FT intron 3221..3384
FT /number="7"
FT exon 3385..3389
FT /number="8"
FT UTR 3390..4302
SQ Sequence 4302 BP; 831 A; 1204 C; 1296 G; 971 T; 0 other;
tattttgctg gatgtagttt aatattacct gaggtaaggt aaggcaaaga gtgggaggca 60
gggagtccag ttcagggacg gggattccag gagaagtgaa ggggaagggg ctgggcgcag 120
cctgggggtc tctccctggt ttccacagac agatccttgg ccaggactca ggcacacagt 180
gtgacaaaga tgcttggtgt aggagaagag ggatcaggac gaagtcccag gtcccgggcg 240
gggttctcag ggtctcaggc tccaagggcc gtgtctgcac tggggaggcg ccgcgttgag 300
gattctccac tcccctgagt ttcacttctt ctcccaacct gcgtcgggtc cttcttcctg 360
aatactcatg acgcgtcccc aattcccact cccattgggt gtcgggttct agagaagcca 420
atcagcgtct ccgcagtccc ggttctaaag tccccagtca cccacccgga ctcagattct 480
ccccagacgc cgagatgcgg gtcatggcgc cccgaaccct catcctgctg ctctcgggag 540
ccctggccct gaccgagacc tgggcctgtg agtgcggggt tgggagggaa acggcctctg 600
cggagaggaa cgaggtgccc gcccggcgag ggcgcaggac ccggggagcc gcgcagggag 660
gagggtcggg cgggtctcag cccctcctcg cccccaggct cccactccat gaagtatttc 720
ttcacatccg tgtcccggcc tggccgcgga gagccccgct tcatctcagt gggctacgtg 780
gacgacacgc agttcgtgcg gttcgacagc gacgccgcga gtccgagagg ggagccgcgg 840
gcgccgtggg tggagcagga ggggccggag tattgggacc gggagacaca gaagtacaag 900
cgccaggcac agactgaccg agtgagcctg cggaacctgc gcggctacta caaccagagc 960
gaggccggtg agtgaccccg gcccggggcg caggtcacga cccctcctca tcccccacgg 1020
acggcccggg tcgccccaag tctcccggtc tgagatccac cccgaggctg cggaacccgc 1080
ccagaccctc gaccggagag agccccagtc acctttaccc ggtttcattt tcagtttagg 1140
ccaaaatccc cgcgggttgg tcgggactgg ggcggggctc gggggacggg gctgaccacg 1200
ggggcggggc cagggtctca caccctccag tggatgtgtg gctgcgacct ggggcccgac 1260
gggcgcctcc tccgcgggta tgaccagtac gcctacgacg gcaaggatta catcgccctg 1320
aacgaggacc tgcgctcctg gaccgccgcg gacaccgcgg ctcagatcac ccagcgcaag 1380
tgggaggcgg cccgtgtggc ggagcagcgg agagcctacc tggagggcac gtgcgtggag 1440
tggctccgca gatacctgga gaacgggaag gagacgctgc agcgcgcggg taccaggggc 1500
agtggggagc cttccccatc tcccgtagat ctcccggcat ggcctcccac gaggagggga 1560
ggaaaatggg atcagcgcta gaatatcgcc ctcccttgaa tggagaatgg gatgagtttt 1620
cctgagtttc ctctgagggc cccctctgct ctctaggaca attaagggat gaagtccttg 1680
aggaaatgga ggggaagaca gtccctggaa tactgatcag gggtcccctt tgaccacttt 1740
gaccactgca gcagctgtgg tcaggctgct gacctttctc tcaggccttg ttctctgcct 1800
cacgctcaat gtgtttgaag gtttgattcc agcttttctg agtccttcgg cctccactca 1860
ggtcaggacc agaagtcgct gttcctccct cagagactag aactttccaa tgaataggag 1920
attatcccag gtgcctgtgt ccaggctggc gtctgggttc tgtgccccct tccccacccc 1980
aggtgtcctg tccattctca ggatggtcac atgggcgctg ttggagtgtc gcaagagaga 2040
tacaaagtgt ctgaattttc tgactcttcc cgtcagaaca cccaaagaca cacgtgaccc 2100
accatcccgt ctctgaccat gaggccaccc tgaggtgctg ggccctgggc ttctaccctg 2160
cggagatcac actgacctgg cagtgggatg gggaggacca aactcaggac accgagcttg 2220
tggagaccag gccagcagga gatggaacct tccagaagtg ggcagctgtg atggtgcctt 2280
ctggagaaga gcagagatac acgtgccatg tgcagcacga ggggctgccg gagcccctca 2340
ccctgagatg gggtaaggag ggggatgagg ggtgatgtgt cttctcaggg aaagcagaag 2400
tcctggagcc cttcagccgg gtcagggctg aggcttggag gtcagggccc ctcaccttcc 2460
cctcctttcc cagagccgtc ttcccagccc accatcccca tcgtgggcat cgttgctggc 2520
ctggctgtcc tggctgtcct agctgtccta ggagctgtgg tggctgttgt gatgtgtagg 2580
aggaagagct caggtaggga aggggtgagg agtggggtct gggttttctt gttccactgg 2640
gagtttcaag ccccaggtag aagtgtgccc cacctcgtta ctggaagcac catccacaca 2700
tgggccatcc cagcctggga ccctgtgtgc cagcacttac tctgttgtga agcacatgac 2760
aatgaaggac agatgtatca ccttgatgat tatggtgttg gggtccttga ttccagcatt 2820
catgagtcag gggaaggtcc ctgctaagga cagaccttag gagggcagtt gcttcagaac 2880
ccacagctgc tttccccgtg tttcctgatc ctgccctggg tctgcagtca tagttctgga 2940
aacttctctt gggtccaaga ctaggaggtt cccctaagat cgcatggccc tgcctcctcc 3000
ctgtcccctc acagggcatt ttcttcccac aggtggaaaa ggagggagct gctctcaggc 3060
tgcgtgtaag tgatggcggt gggcgtgtgg aggagctcac ccaccccata attcctcttg 3120
tcccacatct cctgcgggct ctgaccaggt cttttttttt gttctacccc agccagcaac 3180
agtgcccagg gctctgatga gtctctcatc gcttgtaaag gtgagattct ggggagctga 3240
agtggtcggg ggtggggcag agggaaaagg cctaggtaat ggggatcctt tgattgggac 3300
gtttcgaatg tgtggtgagc tgttcagagt gtcatcactt accatgactg acctgaattt 3360
gttcatgact attgtgttct gtagcctgag acagctgcct gtgtgggact gagatgcagg 3420
atttcttcac acctctcctt tgtgacttca agagcctctg gcatctcttt ctgcaaaggc 3480
atctgaatgt gtctgcgttc ctgttagcat aatgtgagga ggtggagaga cagcccaccc 3540
ccgtgtccac cgtgacccct gtccccacac tgacctgtgt tccctccccg atcatctttc 3600
ctgttccaga gaagtgggct ggatgtctcc atctctgtct caacttcatg gtgcgctgag 3660
ctgcaacttc ttacttccct aatgaagtta agaacctgaa tataaatttg ttttctcaaa 3720
tatttgctat gaagggttga tggattaatt aaataagtca attcctggaa gttgagagag 3780
caaataaaga cctgagaacc ttccagaatc cgcatgttcg ctgtgctgag tctgttgcag 3840
gtgggggtgg ggaaggctgt gaggagacga gtgtggacgg ggcctgtgcc tagttgctgt 3900
tcagttcttc atgggcttta tgtggtcagt cctcagctgg gtcaccttca ctgctccatt 3960
gtccttgtcc cttcagtgga aacttgtcca gcgggagctg tgaccacaga ggctcacaca 4020
tcgcccaggg cagcccctgc acacgggagt ccctgtgctt tctgagacaa attttcagac 4080
ccagtcagct cctgccctcc ttctagggct cctcttctgc tttggtctcc tgccctctct 4140
cccttccctg attccagtga tcttcgtgct gactccaatc ccaactcatg aatctaaagc 4200
agagcctaat ttagatttat atttgtttgt aaaattgggt ccatagtcta gaattgttcc 4260
ttcctgaaga gagaaacctg attgtgtgct gcagtgtgcg gg 4302
//