IHECRE00004586.1 LIVE JSON  


Type Single donor
Status Complete
Project DEEP
Description German Epigenome Program (DEEP), See metadata at http://deep.dkfz.de/, DEEP ID: 53_Mf07_LPFi_Ct, ENA sample: ERS2369619

Metadata


Biomaterial type primary cell culture
Status wildtype
Donor id 53_Mf07
Passage if expanded 3
Comments isolated from the synovium
Subject id 53_Mf07
Pool no
Gender female
Tissue type lamina propria
Donor age unit week
Taxon id 10090
Species Mus musculus
Disease healthy
Donor age 13
Strain C57BL/6
Culture conditions 10% CO2, DMEM+10%FCS+P/S
Phenotype healthy
Cell type fibroblast

Raw data


Assay Type Experiment Type Archive Primary ID Secondary ID URL
ChIP-Seq ChIP-Seq Input ENA ERX2579780 None http://www.ebi.ac.uk/ena/data/view/ERX2579780
ChIP-Seq ChIP-Seq Input ENA ERX2579781 None http://www.ebi.ac.uk/ena/data/view/ERX2579781
Bisulfite-Seq DNA methylation ENA ERX2579834 None http://www.ebi.ac.uk/ena/data/view/ERX2579834
Bisulfite-Seq DNA methylation ENA ERX2579835 None http://www.ebi.ac.uk/ena/data/view/ERX2579835
Bisulfite-Seq DNA methylation ENA ERX2579836 None http://www.ebi.ac.uk/ena/data/view/ERX2579836
Bisulfite-Seq DNA methylation ENA ERX2579837 None http://www.ebi.ac.uk/ena/data/view/ERX2579837
Bisulfite-Seq DNA methylation ENA ERX2579838 None http://www.ebi.ac.uk/ena/data/view/ERX2579838
DNase-Hypersensitivity DNase-seq ENA ERX2579890 None http://www.ebi.ac.uk/ena/data/view/ERX2579890
DNase-Hypersensitivity DNase-seq ENA ERX2579891 None http://www.ebi.ac.uk/ena/data/view/ERX2579891
DNase-Hypersensitivity DNase-seq ENA ERX2579892 None http://www.ebi.ac.uk/ena/data/view/ERX2579892
DNase-Hypersensitivity DNase-seq ENA ERX2579893 None http://www.ebi.ac.uk/ena/data/view/ERX2579893
DNase-Hypersensitivity DNase-seq ENA ERX2579894 None http://www.ebi.ac.uk/ena/data/view/ERX2579894
DNase-Hypersensitivity DNase-seq ENA ERX2579895 None http://www.ebi.ac.uk/ena/data/view/ERX2579895
ChIP-Seq Histone H3K27ac ENA ERX2579974 None http://www.ebi.ac.uk/ena/data/view/ERX2579974
ChIP-Seq Histone H3K27ac ENA ERX2579975 None http://www.ebi.ac.uk/ena/data/view/ERX2579975
ChIP-Seq Histone H3K27me3 ENA ERX2580033 None http://www.ebi.ac.uk/ena/data/view/ERX2580033
ChIP-Seq Histone H3K27me3 ENA ERX2580034 None http://www.ebi.ac.uk/ena/data/view/ERX2580034
ChIP-Seq Histone H3K36me3 ENA ERX2580089 None http://www.ebi.ac.uk/ena/data/view/ERX2580089
ChIP-Seq Histone H3K36me3 ENA ERX2580090 None http://www.ebi.ac.uk/ena/data/view/ERX2580090
ChIP-Seq Histone H3K4me1 ENA ERX2580144 None http://www.ebi.ac.uk/ena/data/view/ERX2580144
ChIP-Seq Histone H3K4me1 ENA ERX2580145 None http://www.ebi.ac.uk/ena/data/view/ERX2580145
ChIP-Seq Histone H3K4me3 ENA ERX2580201 None http://www.ebi.ac.uk/ena/data/view/ERX2580201
ChIP-Seq Histone H3K4me3 ENA ERX2580202 None http://www.ebi.ac.uk/ena/data/view/ERX2580202
ChIP-Seq Histone H3K9me3 ENA ERX2580258 None http://www.ebi.ac.uk/ena/data/view/ERX2580258
ChIP-Seq Histone H3K9me3 ENA ERX2580259 None http://www.ebi.ac.uk/ena/data/view/ERX2580259
RNA-Seq mRNA-seq ENA ERX2580308 None http://www.ebi.ac.uk/ena/data/view/ERX2580308
RNA-Seq total-RNA-seq ENA ERX2580373 None http://www.ebi.ac.uk/ena/data/view/ERX2580373
ncRNA-Seq smRNA-seq ENA ERX2580799 None http://www.ebi.ac.uk/ena/data/view/ERX2580799