IHECRE00003679.3 LIVE JSON
| Type | Single donor |
| Status | Complete |
| Project | CEEHRC |
| Description | Primary Tissue from Diseased Brain-Frontal Lobe-Right from donor ID: VNA146 (age 31 years, Male, Diseased Brain-Frontal Lobe-Right sample with donor health condition: Brain Oligodendroglioma) from Yip Lab |
| Previous versions | IHECRE00003679.2 IHECRE00003679.1 |
Metadata
| Biomaterial type | Primary Tissue |
| Donor id | VNA146 |
| Disease ontology uri | http://ncimeta.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code=C0751396 |
| Donor life stage | adult |
| Donor ethnicity | Caucasian |
| Donor sex | Male |
| Subject id | VNA146 |
| Gender | male |
| Donor age unit | year |
| Tissue type | Brain-Frontal Lobe-Right |
| Taxon id | 9606 |
| Species | Homo sapiens |
| Sample ontology uri | http://purl.obolibrary.org/obo/CL_0000128 |
| Disease | Brain Oligodendroglioma |
| Donor age | 31 |
| Donor health status ontology uri | http://ncimeta.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code=C0751396 |
| Collection method | Flash Frozen |
| Phenotype | http://ncimeta.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code=C0751396 , http://purl.obolibrary.org/obo/CL_0000128 |
| Sample id | CEMT0078 |
| Tissue depot | Brain-Frontal Lobe-Right |
| Donor health status | Brain Oligodendroglioma |
| Biomaterial provider | Yip Lab |
Raw data
| Assay Type | Experiment Type | Archive | Primary ID | Secondary ID | URL |
|---|---|---|---|---|---|
| miRNA-Seq | smRNA-Seq | EGA | EGAX00001522919 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| Bisulfite-Seq | DNA Methylation | EGA | EGAX00001630584 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| WGS | WGS | EGA | EGAX00001588938 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| RNA-Seq | mRNA-Seq | EGA | EGAX00001588953 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K4me1 | EGA | EGAX00001567238 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K4me3 | EGA | EGAX00001567239 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K9me3 | EGA | EGAX00001567193 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K27me3 | EGA | EGAX00001567210 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K36me3 | EGA | EGAX00001567219 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K27ac | EGA | EGAX00001567236 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | ChIP-Seq Input | EGA | EGAX00001567244 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |