IHECRE00001020.4 LIVE JSON
| Type | Single donor |
| Status | Complete |
| Project | CEEHRC |
| Description | Primary Tissue from Normal Large Intestine-Colon from donor ID: AKCC55 (77 years, Male, Normal Large Intestine-Colon sample with donor health condition: Large Intestine Adenocarcinoma) from Karsan Lab |
| Previous versions | IHECRE00001020.3 IHECRE00001020.2 IHECRE00001020.1 |
Metadata
| Biomaterial type | Primary Tissue |
| Disease ontology uri | https://ncimeta.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20Metathesaurus&code=C0549184 |
| Donor id | AKCC55 |
| Donor life stage | adult |
| Donor ethnicity | NA |
| Donor sex | Male |
| Subject id | AKCC55 |
| Gender | male |
| Additional note | normal from clear margin of CEMT0067 |
| Donor age unit | year |
| Tissue type | Large Intestine-Colon |
| Taxon id | 9606 |
| Species | Homo sapiens |
| Sample ontology uri | http://purl.obolibrary.org/obo/UBERON_0001156 |
| Disease | None |
| Donor age | 77 |
| Donor health status ontology uri | http://ncimeta.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code=C1333866 |
| Collection method | Flash Frozen |
| Sample id | CEMT0060 |
| Phenotype | http://purl.obolibrary.org/obo/UBERON_0001156 |
| Tissue depot | Large Intestine-Colon [normal from clear margin of CEMT0067] |
| Donor health status | Large Intestine Adenocarcinoma |
| Biomaterial provider | Karsan Lab |
Raw data
| Assay Type | Experiment Type | Archive | Primary ID | Secondary ID | URL |
|---|---|---|---|---|---|
| ChIP-Seq | Histone H3K27me3 | EGA | EGAX00001326653 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K36me3 | EGA | EGAX00001326652 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K27ac | EGA | EGAX00001326753 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | ChIP-Seq Input | EGA | EGAX00001326654 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K4me1 | EGA | EGAX00001326736 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K4me3 | EGA | EGAX00001326740 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K9me3 | EGA | EGAX00001326650 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| Bisulfite-Seq | DNA Methylation | EGA | EGAX00001377795 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| miRNA-Seq | smRNA-Seq | EGA | EGAX00001375073 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| WGS | WGS | EGA | EGAX00001372494 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| RNA-Seq | mRNA-Seq | EGA | EGAX00001353412 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |