IHECRE00001001.1 PREVIOUS JSON  


Type Composite
Status Partial
Project NIH Roadmap Epigenomics
Description REMC Epigenome (Class 5) for Primary T Helper Cells PMA-I Stimulated using donors/samples:62;332
Live version IHECRE00001001.6

Metadata


Biomaterial type Primary Cell
Extraction protocol sonication cycles 1
Passage if expanded NA
Donor ethnicity NA
Donor sex Unknown
Extraction protocol type of sonicator Branson
Taxon id 9606
Species Homo sapiens
Donor age NA
Extraction protocol cell/nuclei lysis
Markers CD4+ T cell
Cell type CD25- IL17- Th stim MACS
Biomaterial provider Dana Farber
Sample common name CD4+ CD25- IL17- PMA-Ionomycin stimulated MACS purified Th Primary Cells

Raw data


Assay Type Experiment Type Archive Primary ID Secondary ID URL
ChIP-Seq ChIP-Seq Input GEO GSM772904 None http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM772904
ChIP-Seq Histone H3K27me3 GEO GSM997267 None http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM997267
ChIP-Seq Histone H3K27ac GEO GSM772905 None http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM772905
ChIP-Seq Histone H3K36me3 GEO GSM997274 None http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM997274
ChIP-Seq Histone H3K27ac GEO GSM997266 None http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM997266
ChIP-Seq Histone H3K4me3 GEO GSM997232 None http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM997232
ChIP-Seq Histone H3K4me1 GEO GSM772902 None http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM772902
ChIP-Seq ChIP-Seq Input GEO GSM1112784 None http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1112784
ChIP-Seq Histone H3K9me3 GEO GSM997269 None http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM997269
ChIP-Seq Histone H3K9me3 GEO GSM772903 None http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM772903
ChIP-Seq Histone H3K27me3 GEO GSM772899 None http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM772899
ChIP-Seq Histone H3K4me3 GEO GSM916071 None http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM916071
ChIP-Seq Histone H3K36me3 GEO GSM772892 None http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM772892
ChIP-Seq Histone H3K4me1 GEO GSM997268 None http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM997268