IHECRE00000942.1 PREVIOUS JSON  


Type Single donor
Status Complete
Project NIH Roadmap Epigenomics
Description REMC Epigenome (Class 2) for Pancreas using donors/samples:STL003
Live version IHECRE00000942.6

Metadata


Sample alias STL003PA-01
Biomaterial type Primary Tissue
Donor id STL003
Donor ethnicity Caucasian
Donor sex Male
Tissue type Pancreas
Taxon id 9606
Species Homo sapiens
Disease None
Donor age 34
Collection method Autopsy
Tissue depot N/A
Biomaterial provider Shin Lin, Stanford University
Donor health status polysubstance abuse (NO diabetes, hypertension, coronary artery disease, cancer)
Sample common name Pancreas

Raw data


Assay Type Experiment Type Archive Primary ID Secondary ID URL
ChIP-Seq ChIP-Seq Input GEO GSM906419 None http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM906419
RNA-Seq mRNA-Seq GEO GSM1010966 None http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1010966
ChIP-Seq Histone H3K4me3 GEO GSM910581 None http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM910581
ChIP-Seq Histone H3K4me1 GEO GSM910576 None http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM910576
Bisulfite-Seq DNA Methylation GEO GSM983651 None http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM983651
ChIP-Seq Histone H3K36me3 GEO GSM910570 None http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM910570
ChIP-Seq Histone H3K27me3 GEO GSM910563 None http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM910563
ChIP-Seq Histone H3K9me3 GEO GSM910586 None http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM910586
DNase-Hypersensitivity Chromatin Accessibility GEO GSM1027326 None http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1027326
ChIP-Seq Histone H3K27ac GEO GSM906397 None http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM906397