Uses of Interface
uk.ac.ebi.kraken.interfaces.common.Value

Packages that use Value

Package	Description
uk.ac.ebi.kraken.interfaces.common	Common Interfaces
uk.ac.ebi.kraken.interfaces.go
uk.ac.ebi.kraken.interfaces.uniparc
uk.ac.ebi.kraken.interfaces.uniprot	UniProt
uk.ac.ebi.kraken.interfaces.uniprot.citationsNew
uk.ac.ebi.kraken.interfaces.uniprot.comments
uk.ac.ebi.kraken.interfaces.uniprot.dbx
uk.ac.ebi.kraken.interfaces.uniprot.dbx.go
uk.ac.ebi.kraken.interfaces.uniprot.description
uk.ac.ebi.kraken.interfaces.uniprot.evidences
uk.ac.ebi.kraken.interfaces.uniprot.features
uk.ac.ebi.kraken.interfaces.uniprot.genename
uk.ac.ebi.kraken.interfaces.uniprot.organism
uk.ac.ebi.kraken.interfaces.uniref
uk.ac.ebi.kraken.interfaces.uniref.member

Uses of Value in uk.ac.ebi.kraken.interfaces.common

Subinterfaces of Value in uk.ac.ebi.kraken.interfaces.common

Modifier and Type	Interface	Description
interface	EntryId	Implemented by all entries describing a protein sequence.
interface	NewtTaxon	Defines a Taxon as represented in the NEWT database.

Uses of Value in uk.ac.ebi.kraken.interfaces.go

Subinterfaces of Value in uk.ac.ebi.kraken.interfaces.go

Modifier and Type	Interface	Description
interface	GoDefinition
interface	GoEcoEvidence	Represents a GO ECO evidence
interface	GoId
interface	GoTermName

Uses of Value in uk.ac.ebi.kraken.interfaces.uniparc

Subinterfaces of Value in uk.ac.ebi.kraken.interfaces.uniparc

Modifier and Type	Interface	Description
interface	UniParcId	Created by IntelliJ IDEA.

Uses of Value in uk.ac.ebi.kraken.interfaces.uniprot

Subinterfaces of Value in uk.ac.ebi.kraken.interfaces.uniprot

Modifier and Type	Interface	Description
interface	EvidencedValue	Most of data in uniprot has evidence EvidencedValue is for this type of data This interface extends Value and HasEvidences
interface	Keyword	A single Keyword in the Keyword annotation of the UniProtEntry.
interface	NcbiTaxon	Encapsulates a single taxon in the taxonomy annotation of the UniProtEntry.
interface	NcbiTaxonomyId
interface	Organelle	Encapsulates a single gene coding of the UniProtEntry.
interface	PrimaryUniProtAccession	The primary UniProtAccession of a UniProtEntry.
interface	SecondaryUniProtAccession	A secondary UniProtAccession of a UniProtEntry.
interface	UniProtAccession	One UniProtAccession of a UniProtEntry.
interface	UniProtId	About This Data Structure
interface	UniProtIsoformId

Uses of Value in uk.ac.ebi.kraken.interfaces.uniprot.citationsNew

Subinterfaces of Value in uk.ac.ebi.kraken.interfaces.uniprot.citationsNew

Modifier and Type	Interface	Description
interface	AgricolaId
interface	Author	The RA (Reference Author) lines list the authors of the paper (or other work) cited.
interface	AuthoringGroup	Used in the flatfile either in the RA or the RG line The RG line The Reference Group (RG) line lists the consortium name associated with a given citation.
interface	BookName	A book can in the SwissProt flatfile fromat have besides a title have a name This might be a sub title or other memnomic for a book.
interface	CitationSummary	Created by IntelliJ IDEA.
interface	City
interface	Country
interface	DOI
interface	Editor
interface	Institute
interface	JournalName
interface	Locator
interface	MedlineId
interface	Page
interface	PatentNumber
interface	PublicationDate
interface	Publisher
interface	PubMedId
interface	SampleSource	Created by IntelliJ IDEA.
interface	Title
interface	Volume

Uses of Value in uk.ac.ebi.kraken.interfaces.uniprot.comments

Subinterfaces of Value in uk.ac.ebi.kraken.interfaces.uniprot.comments

Modifier and Type	Interface	Description
interface	AllergenComment
interface	AlternativeProductsEvent
interface	BiotechnologyComment
interface	CatalyticActivityComment
interface	CautionComment
interface	CommentText	Free text comment, has EvidencedValue and hasCommentStatus used in free text comment
interface	DatabaseFTP
interface	DatabaseName
interface	DatabaseNote
interface	DatabaseURL
interface	DevelopmentalStageComment
interface	DiseaseAcronym	A name by which the disease is also known as.
interface	DiseaseDescription	Generic description of the disease.
interface	DiseaseId	Identifier of the disease within the disease controlled vocabulary file humdisease.txt.
interface	DiseaseReferenceId	The identifier of the disease provided by the external source DiseaseReferenceType
interface	DisruptionPhenotypeComment
interface	DomainComment
interface	Enzyme
interface	EnzymeRegulationComment
interface	FunctionComment
interface	InductionComment
interface	InteractionGeneName
interface	InteractorAccession
interface	InteractorUniProtId
interface	IsoformId
interface	IsoformName
interface	IsoformSequenceId
interface	IsoformSynonym
interface	MassSpectrometryCommentNote
interface	MassSpectrometryCommentSource	Created by mkleen@ebi.ac.uk Date: 14-Sep-2007 Time: 15:02:43
interface	MassSpectrometryRangeNote
interface	MaxVelocityUnit
interface	MiscellaneousComment
interface	PAGEDataComment	Created by IntelliJ IDEA.
interface	PAGEDataMolecularWeight
interface	PAGEDataPl
interface	PathwayComment
interface	PharmaceuticalComment
interface	PolymorphismComment
interface	PtmComment
interface	SequenceCautionCommentNote	User: Emilio Salazar Date: 14-May-2007
interface	SimilarityComment
interface	SubcellularLocationValue	Created by IntelliJ IDEA.
interface	Substrate
interface	SubunitComment
interface	TextOnlyComment	User: Emilio Salazar Date: 17-Nov-2005
interface	TissueSpecificityComment
interface	ToxicDoseComment

Methods in uk.ac.ebi.kraken.interfaces.uniprot.comments that return Value

Modifier and Type	Method	Description
Value	SubcellularLocation.toValue()	Deprecated.

Uses of Value in uk.ac.ebi.kraken.interfaces.uniprot.dbx

Subinterfaces of Value in uk.ac.ebi.kraken.interfaces.uniprot.dbx

Modifier and Type	Interface	Description
interface	DatabaseAttribute

Uses of Value in uk.ac.ebi.kraken.interfaces.uniprot.dbx.go

Subinterfaces of Value in uk.ac.ebi.kraken.interfaces.uniprot.dbx.go

Modifier and Type	Interface	Description
interface	GoEvidenceSource	This code is autogenerated by the class uk.ac.ebi.util.autocode.AutoCoder.
interface	GoId
interface	GoTerm

Classes in uk.ac.ebi.kraken.interfaces.uniprot.dbx.go that implement Value

Modifier and Type	Class	Description
enum	GoEvidenceType
enum	OntologyType

Uses of Value in uk.ac.ebi.kraken.interfaces.uniprot.description

Subinterfaces of Value in uk.ac.ebi.kraken.interfaces.uniprot.description

Modifier and Type	Interface	Description
interface	Field	Stores the sub category type of a specific category as well as the respective value.

Uses of Value in uk.ac.ebi.kraken.interfaces.uniprot.evidences

Subinterfaces of Value in uk.ac.ebi.kraken.interfaces.uniprot.evidences

Modifier and Type	Interface	Description
interface	EvidenceAttribute	The EvidenceAttribute of the Evidence.
interface	EvidenceId	The EvidenceId of the Evidence.
interface	EvidenceOriginName	The EvidenceOriginName of the Evidence.

Uses of Value in uk.ac.ebi.kraken.interfaces.uniprot.features

Subinterfaces of Value in uk.ac.ebi.kraken.interfaces.uniprot.features

Modifier and Type	Interface	Description
interface	CitationConflictReport
interface	ConflictReport
interface	ConflictReportDescription	User: mkleen@ebi.ac.uk Date: 18-Nov-2005 Time: 14:17:39
interface	FeatureDescription
interface	FeatureId
interface	FeatureSequence
interface	MutagenReport
interface	UnspecifiedConflictReport
interface	VariantReport
interface	VarsplicIsoform

Uses of Value in uk.ac.ebi.kraken.interfaces.uniprot.genename

Subinterfaces of Value in uk.ac.ebi.kraken.interfaces.uniprot.genename

Modifier and Type	Interface	Description
interface	GeneName	About This Data Structure
interface	GeneNameSynonym	About This Data Structure
interface	OrderedLocusName	About This Data Structure
interface	ORFName	About This Data Structure

Uses of Value in uk.ac.ebi.kraken.interfaces.uniprot.organism

Subinterfaces of Value in uk.ac.ebi.kraken.interfaces.uniprot.organism

Modifier and Type	Interface	Description
interface	OrganismCommonName	About This Data Structure
interface	OrganismName	About This Data Structure
interface	OrganismScientificName	About This Data Structure
interface	OrganismSynonym	About This Data Structure

Uses of Value in uk.ac.ebi.kraken.interfaces.uniref

Subinterfaces of Value in uk.ac.ebi.kraken.interfaces.uniref

Modifier and Type	Interface	Description
interface	UniRefDatabaseVersion
interface	UniRefEntryId
interface	UniRefEntryName

Uses of Value in uk.ac.ebi.kraken.interfaces.uniref.member

Subinterfaces of Value in uk.ac.ebi.kraken.interfaces.uniref.member

Modifier and Type	Interface	Description
interface	MemberId	Created by IntelliJ IDEA.
interface	NCBITaxonomy
interface	OverlapRegion
interface	ProteinName
interface	SourceOrganism
interface	Type
interface	UniParcAccession
interface	UniProtAccession