- Course overview
- Search within this course
- Why do we need a pathway database?
- What is Reactome?
- When to use Reactome
- Who is Reactome for?
- Navigating Reactome
- Understanding the Pathway Browser
- Analysing data
- Programmatic access
- Contributing to Reactome
- Summary
- Try it yourself!
- Your feedback
- Get help and support on Reactome
All materials are free cultural works licensed under a Creative Commons Attribution 4.0 International (CC BY 4.0) license, except where further licensing details are provided.
Try it yourself!
You are now equipped with the knowledge of an advanced Reactome user. It’s time to test your skills and get some hands-on experience.
Searching Reactome
Try to search for your favourite protein, reaction or pathway in Reactome.
- Do you know where to search in the website?
- What types of information can you find for the keyword?
- Can you navigate to a pathway or reaction of interest in the pathway browser?
Exploring diagrams
Try to play around with the different types of diagrams of your favourite pathway in Reactome.
- Can you locate the pathway in the overview diagrams – network and voronoi?
- What information does the textbook-style figures provide?
- Can you understand the SBGN-level view of the pathway?
- Do you know where to find the key in the diagram panel?
- Is there an SBGN-Complement figure for this pathway?
- Can you download this diagram as a pptx?
External resources
Try to investigate the external resources annotated in Reactome and how to use them effectively.
- Are there external interactors (from IntAct) available in your favourite pathway?
- How to get details about these external interactors from the SBGN diagram?
- Can you find protein expression information (from ExpressionAtlas) in your tissue of interest?