{"id":100,"date":"2020-04-28T10:55:24","date_gmt":"2020-04-28T10:55:24","guid":{"rendered":"http:\/\/www.ebi.ac.uk\/training\/online\/courses\/nextflow\/submitting-data-to-resource-name\/"},"modified":"2022-05-20T07:26:03","modified_gmt":"2022-05-20T07:26:03","slug":"nextflow-channels-processes-and-operators","status":"publish","type":"page","link":"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/nextflow\/nextflow-channels-processes-and-operators\/","title":{"rendered":"Nextflow channels, processes and operators"},"content":{"rendered":"\n<p class=\"wp-block-paragraph\">In this third section of the course, you will discover more about the syntax of Nextflow and Nextflow Channels, Processes and Operators. <\/p>\n\n\n\n<div style=\"text-align:center\"><iframe loading=\"lazy\" src=\"https:\/\/embl-ebi.cloud.panopto.eu\/Panopto\/Pages\/Embed.aspx?id=75c00128-517d-4457-a9a8-ae7100d92c5b&amp;autoplay=false&amp;offerviewer=true&amp;showtitle=true&amp;showbrand=true&amp;captions=false&amp;interactivity=all\" style=\"border: 1px solid #464646;\" allowfullscreen=\"\" allow=\"autoplay\" width=\"720\" height=\"405\"><\/iframe><\/div>\n\n\n\n<p class=\"has-text-align-center wp-block-paragraph\"> This video is made available under a <a rel=\"noreferrer noopener\" href=\"https:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/\" target=\"_blank\">CC BY-NC-ND licence<\/a>\u00a0by\u00a0Seqera Labs.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Links mentioned in the video:<\/p>\n\n\n\n<ol class=\"wp-block-list\"><li><a href=\"https:\/\/www.nextflow.io\/docs\/latest\/channel.html\" target=\"_blank\" rel=\"noreferrer noopener\">Nextflow Channels<\/a>,&nbsp;<a href=\"https:\/\/www.nextflow.io\/docs\/latest\/channel.html#fromfilepairs\" target=\"_blank\" rel=\"noreferrer noopener\">fromFilePairs<\/a><\/li><li><a href=\"https:\/\/docs.oracle.com\/javase\/tutorial\/essential\/io\/fileOps.html#glob\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/docs.oracle.com\/javase\/tutorial\/essential\/io\/fileOps.html#glob<\/a><\/li><li><a href=\"https:\/\/www.nextflow.io\/docs\/latest\/config.html#scope-executor\" target=\"_blank\" rel=\"noreferrer noopener\">Scope executor<\/a><\/li><li><a href=\"https:\/\/marketplace.visualstudio.com\/items?itemName=nextflow.nextflow\" target=\"_blank\" rel=\"noreferrer noopener\">Nextflow with VS Code IDE<\/a><\/li><li><a href=\"https:\/\/www.nextflow.io\/docs\/latest\/process.html\" target=\"_blank\" rel=\"noreferrer noopener\">Nextflow Processes<\/a>,&nbsp;<a href=\"https:\/\/www.nextflow.io\/docs\/latest\/process.html#errorstrategy\" target=\"_blank\" rel=\"noreferrer noopener\">error strategy<\/a>&nbsp;,&nbsp;<a href=\"https:\/\/www.nextflow.io\/docs\/latest\/process.html#dynamic-directives\" target=\"_blank\" rel=\"noreferrer noopener\">dynamic directives<\/a>, and&nbsp;<a href=\"https:\/\/www.nextflow.io\/docs\/latest\/process.html#dynamic-computing-resources\" target=\"_blank\" rel=\"noreferrer noopener\">dynamic computing resources<\/a><\/li><\/ol>\n","protected":false},"excerpt":{"rendered":"<p>In this third section of the course, you will discover more about the syntax of Nextflow and Nextflow Channels, Processes and Operators. This video is made available under a CC BY-NC-ND licence\u00a0by\u00a0Seqera Labs. Links mentioned in the video: Nextflow Channels,&nbsp;fromFilePairs https:\/\/docs.oracle.com\/javase\/tutorial\/essential\/io\/fileOps.html#glob Scope executor Nextflow with VS Code IDE Nextflow Processes,&nbsp;error strategy&nbsp;,&nbsp;dynamic directives, and&nbsp;dynamic computing resources<\/p>\n","protected":false},"author":30,"featured_media":0,"parent":0,"menu_order":4,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-100","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/nextflow\/wp-json\/wp\/v2\/pages\/100","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/nextflow\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/nextflow\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/nextflow\/wp-json\/wp\/v2\/users\/30"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/nextflow\/wp-json\/wp\/v2\/comments?post=100"}],"version-history":[{"count":8,"href":"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/nextflow\/wp-json\/wp\/v2\/pages\/100\/revisions"}],"predecessor-version":[{"id":289,"href":"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/nextflow\/wp-json\/wp\/v2\/pages\/100\/revisions\/289"}],"wp:attachment":[{"href":"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/nextflow\/wp-json\/wp\/v2\/media?parent=100"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}