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DSL modules and Nextflow configuration

In this section of the course, you will learn about Nextflow DSL & modules. It covers more about function, process and workflow definition, as well as syntax. Evan also touches briefly on implicit workflow and composition.

This video is made available under a CC BY-NC-ND licence by Seqera Labs.

Links shared during the recording:

  1. Nextflow configscope environment
  2. The most up-to-date and stable versions using DSL2 will be either nf-core/rnaseq or nf-core/viralrecon
    1. https://nf-co.re/rnaseq
    2. https://nf-co.re/viralrecon
    3. https://github.com/nextflow-io/rnaseq-nf/tree/dsl2
  3. Important nf-core links to study
    1. https://nf-co.re/
    2. https://nf-co.re/developers/adding_modules
    3. https://github.com/nf-core/modules
    4. https://github.com/nf-core/tools#modules
    5. https://biocontainers.pro/
  4. Other
    1. nf-core slack channel to join: https://nf-co.re/join
    2. https://www.nextflow.io/docs/latest/cli.html#execution-as-a-background-job