- Course overview
- Search within this course
- What is antimicrobial resistance?
- How do we study pathogens?
- Public pathogen data
- A guide to the Pathogens Portal
- Analysing genomic data from pathogens
- Identification and investigation of antimicrobial resistance genes
- Looking for antimicrobial resistance genes in different environments
- Data sharing
- The future of AMR
- Crossword: Test your knowledge
- Your feedback
- Further resources
- Help and support
- Glossary
- References
All materials are free cultural works licensed under a Creative Commons Attribution 4.0 International (CC BY 4.0) license, except where further licensing details are provided.
Further resources
On-demand learning:
This tutorial introduced key concepts related to AMR and demonstrated their application using EMBL-EBI resources. You can learn more about these concepts and resources through online tutorials and recorded webinars available in the on-demand section of the training website. Here is a selection of online tutorials related to this course which you may find useful:
- Biostatistics: A practical introduction
- Bringing data to life
- EMBL-EBI, programmatically
- Ensembl Genomes (non-chordates): Quick tour
- Functional genomics I
- Human genetic variation
- MGnify: Quick Tour
- Phylogenetics: An introduction
- UniProt: Quick tour
- Workflows: Combining tools for data analysis
To learn more about the tools and resources provided by EMBL-EBI visit ‘Services‘ section of the website. Also keep an eye on our upcoming webinars to join us live!
Additional tools:
The Pathogens Informatics and Modelling group at EMBL-EBI have also developed a selection of bioinformatics tools for the analysis of microbial data, which may be of interest. This includes tools for epidemiological modelling, statistical genetics, gene annotation, and pangenome analysis.