{"id":160,"date":"2020-05-19T10:49:11","date_gmt":"2020-05-19T10:49:11","guid":{"rendered":"http:\/\/www.ebi.ac.uk\/training\/online\/courses\/genome-properties-tutorial\/how-to-access-and-navigate-the-genome-properties-viewer\/"},"modified":"2024-04-02T14:37:41","modified_gmt":"2024-04-02T14:37:41","slug":"genome-properties-viewer","status":"publish","type":"page","link":"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/genome-properties-tutorial\/genome-properties-viewer\/","title":{"rendered":"Genome Properties viewer"},"content":{"rendered":"\n<p class=\"wp-block-paragraph\">The Genome Properties results are calculated for a small set of representative proteomes with every release. This set covers a range of species, including the major model organisms. The pre-calculated results for each of these proteomes can be viewed in the context of a taxonomic tree in the web-based viewer (Figure 5).<\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Each row in the table represents a Genome Property, and each column represents a species. The taxonomic tree can be navigated by clicking on the nodes. Double clicking a node will load the Genome Properties data for all species contained within that node.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\">There are various options for searching and filtering the Genome Properties data. There are also various labeling options to assist with visualisation. Each Genome Property is reported as either&nbsp;<em>yes<\/em>&nbsp;(dark blue),&nbsp;<em>partial<\/em>&nbsp;(light blue) or&nbsp;<em>no<\/em>&nbsp;(grey) for each species. The pie-charts at the end of each row and column show a summary of the data for that row\/column. Comparing the pattern of Genome Properties results between species in this manner, allows for phylogenetic profiling.<\/p>\n\n\n\n<p>Click on the <img loading=\"lazy\" decoding=\"async\" class=\"alignnone  wp-image-327\" src=\"http:\/\/www.ebi.ac.uk\/training\/online\/courses\/genome-properties-tutorial\/wp-content\/uploads\/sites\/52\/2024\/04\/info.png\" alt=\"\" width=\"45\" height=\"42\" \/>\u00a0to explore the Genome Properties viewer page.<\/p>\n\n\n<div class=\"h5p-iframe-wrapper\"><iframe id=\"h5p-iframe-4\" class=\"h5p-iframe\" data-content-id=\"4\" style=\"height:1px\" src=\"about:blank\" frameBorder=\"0\" scrolling=\"no\" title=\"Genome Properties viewer\"><\/iframe><\/div>\n\n\n\n<p style=\"font-family: Arial; text-align: center; font-size: 18px;\"><strong>Figure 5<\/strong>\u00a0Website viewer displaying the results for a selection of archeal species, and Genome Properties with &#8220;biosynthesis&#8221; in their name.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>The Genome Properties results are calculated for a small set of representative proteomes with every release. This set covers a range of species, including the major model organisms. The pre-calculated results for each of these proteomes can be viewed in the context of a taxonomic tree in the web-based viewer (Figure 5). Each row in&#8230;<\/p>\n","protected":false},"author":30,"featured_media":0,"parent":0,"menu_order":5,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-160","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/genome-properties-tutorial\/wp-json\/wp\/v2\/pages\/160","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/genome-properties-tutorial\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/genome-properties-tutorial\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/genome-properties-tutorial\/wp-json\/wp\/v2\/users\/30"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/genome-properties-tutorial\/wp-json\/wp\/v2\/comments?post=160"}],"version-history":[{"count":7,"href":"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/genome-properties-tutorial\/wp-json\/wp\/v2\/pages\/160\/revisions"}],"predecessor-version":[{"id":331,"href":"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/genome-properties-tutorial\/wp-json\/wp\/v2\/pages\/160\/revisions\/331"}],"wp:attachment":[{"href":"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/genome-properties-tutorial\/wp-json\/wp\/v2\/media?parent=160"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}