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Exploring environmental DNA

Metabarcoding workflow and open data resources for eDNA research

    • Course overview
    • Search within this course
    • Environmental DNA
    • DNA metabarcoding and its applications
      • Marine biodiversity from seawater samples
      • Terrestrial biodiversity from soil samples
      • Comparing biodiversity in urban and forest soils
      • Terrestrial biodiversity from airborne samples
      • Biodiversity from diet analysis
    • Workflow for eDNA metabarcoding
      • Sampling
        • DNA degradation
      • DNA extraction
      • Sequencing
      • Bioinformatics analysis
    • DADA2 for analysing metabarcoding data
      • Do it yourself: Data analysis with DADA2
    • Taxonomic classification to assess biodiversity
      • Open resources for assigning taxonomy
      • Reference databases for biodiversity studies
    • Statistics principles in data analysis
      • Statistical thinking in microbial ecology
    • Advances in biodiversity exploration
      • Multi-omics strategies
        • Pros and cons of multi-omics strategies
      • Advanced technologies: from single cells to diverse communities
      • Long read sequencing
      • Check your learning: Advances in biodiversity exploration
    • Open data resources for eDNA
      • European Nucleotide Archive
        • ENA’s role in the BiCIKL project
        • Check your learning: ENA
      • MGnify
        • MGnify practicals
        • Check your learning: MGnify
    • Bringing data to life: Data management and sharing
    • Further learning
    • Your feedback
    • References

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