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Uploading data

The browser allows for uploading of custom data in several common file formats. For example, RNAseq data in BAM format can be used. Alignments can also be visualised alongside the reference annotation (Figure 5).

Figure 5 Visualising a BAM file in Ensembl Genomes. In this example, annotated genes (red transcript models) are visualised against the reference genome. A BAM file (‘Custom-BAM’) showing RNAseq data has also been visualised. Individual read alignments (grey tracks, with red ends on each read) and overall read coverage at each position (top track, grey) are shown.