- Course overview
- Search within this course
- How to take this course
- Installing the Perl API
- Core
- Compara trees
- Compara alignments
- Your feedback
- Get help and support on the Ensembl Perl API
- References
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Phenotype
In this presentation, you will find out about retrieving phenotype data from Ensembl.
Exercise 5
- Find all phenotypes associated with the human SNP named rs12913832 and give:
- Phenotype description, source and p‐value
- Find frequencies in 1000 Genomes populations for the (risk) allele assosicated with phenotype ‘Eye color’
Hint: You might find the perl split function useful: my ($name, $allele) = split(‘‐’, ‘rs9894429‐T’); 1000 genomes populations start with: ‘1000GENOMES’
 | Anja explains the answers to these questions in this 2-minute video. You can also download her sample script and expected output. |