{"id":348,"date":"2020-11-20T16:07:20","date_gmt":"2020-11-20T16:07:20","guid":{"rendered":"http:\/\/www.ebi.ac.uk\/training\/online\/courses\/embl-ebi-programmatically\/mgnify-programmatically\/"},"modified":"2022-01-11T15:16:59","modified_gmt":"2022-01-11T15:16:59","slug":"mgnify-programmatically","status":"publish","type":"page","link":"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/embl-ebi-programmatically\/mgnify-programmatically\/","title":{"rendered":"MGnify, programmatically"},"content":{"rendered":"\n<p>This webinar provides an overview of the <a href=\"https:\/\/www.ebi.ac.uk\/metagenomics\/\" target=\"_blank\" rel=\"noreferrer noopener\">MGnify <\/a>API. MGnify offers an automated pipeline for the analysis and archiving of microbiome data to help determine the taxonomic diversity and functional &amp; metabolic potential of environmental samples. Users can submit their own data for analysis or freely browse all of the analysed public datasets held within the repository.<\/p>\n\n\n\n<p>The webinar includes how to utilise the API using a browser,&nbsp;where to find documentation,&nbsp;how to use filtering and pagination,&nbsp;available output formats,&nbsp;and scripting examples in Python.<\/p>\n\n\n\n<p>This webinar was recorded on 18th November 2020.<\/p>\n\n\n\n<figure class=\"wp-block-embed is-type-video is-provider-youtube wp-block-embed-youtube wp-embed-aspect-16-9 wp-has-aspect-ratio\"><div class=\"wp-block-embed__wrapper\">\n<iframe loading=\"lazy\" title=\"MGnify API: accessing microbiome data computationally\" width=\"500\" height=\"281\" src=\"https:\/\/www.youtube.com\/embed\/2P5cAG9Htag?feature=oembed\" frameborder=\"0\" allow=\"accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share\" referrerpolicy=\"strict-origin-when-cross-origin\" allowfullscreen><\/iframe>\n<\/div><\/figure>\n\n\n\n<p><\/p>\n\n\n\n<div class=\"wp-block-file\"><a href=\"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/embl-ebi-programmatically\/wp-content\/uploads\/sites\/128\/2020\/11\/MGnify_API_webinar_slides.pdf\">MGnify API webinar slides<\/a><a href=\"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/embl-ebi-programmatically\/wp-content\/uploads\/sites\/128\/2020\/11\/MGnify_API_webinar_slides.pdf\" class=\"wp-block-file__button\" download>Download<\/a><\/div>\n","protected":false},"excerpt":{"rendered":"<p>This webinar provides an overview of the MGnify API. MGnify offers an automated pipeline for the analysis and archiving of microbiome data to help determine the taxonomic diversity and functional &amp; metabolic potential of environmental samples. Users can submit their own data for analysis or freely browse all of the analysed public datasets held within&#8230;<\/p>\n","protected":false},"author":6,"featured_media":0,"parent":0,"menu_order":11,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-348","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/embl-ebi-programmatically\/wp-json\/wp\/v2\/pages\/348","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/embl-ebi-programmatically\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/embl-ebi-programmatically\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/embl-ebi-programmatically\/wp-json\/wp\/v2\/users\/6"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/embl-ebi-programmatically\/wp-json\/wp\/v2\/comments?post=348"}],"version-history":[{"count":4,"href":"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/embl-ebi-programmatically\/wp-json\/wp\/v2\/pages\/348\/revisions"}],"predecessor-version":[{"id":420,"href":"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/embl-ebi-programmatically\/wp-json\/wp\/v2\/pages\/348\/revisions\/420"}],"wp:attachment":[{"href":"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/embl-ebi-programmatically\/wp-json\/wp\/v2\/media?parent=348"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}