- Course overview
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- What is BioImage Archive?
- Searching data in the BioImage Archive
- Visualising image data in the BioImage Archive
- Submitting data to the BioImage Archive
- Your feedback
- Get help and support on BioImage Archive
- References
Download using Aspera
When downloading large volumes of data, the Aspera protocol can be useful. You will need to download the Aspera ascp command line interface. Please select the correct operating system. The ascp command line client is present in the bin folder in the installation directory. Your command for download should be like this:
ascp -P33001 -i <key> bsaspera@fasp-beta.ebi.ac.uk:<files to download> <download location on your machine>
where:
-P33001andbsaspera@fasp-beta.ebi.ac.ukdefine the port, user and server for the Aspera connection<key>is the public key for the Aspera connection which has the value<aspera cli installation directory>/etc/asperaweb_id_dsa.opensshfor Linux/MacOS and<aspera cli installation directory>\etc\asperaweb_id_dsa.opensshfor Windows<files to download>might be all files for a certain study, as explained above. Please note that Aspera paths do not need to have pub as the root folder
For example, here’s the command line to download the file aeipf_denoised_reads.fna from submission S-BSST12 to the directory C:\Temp on Windows:
"C:\cli\bin\ascp.exe" -P33001 -i "C:\cli\etc\asperaweb_id_dsa.openssh" bsaspera@fasp-beta.ebi.ac.uk:/S-BSST/012/S-BSST12/Files/aeipf_denoised_reads.fna C:\Temp\