{"id":130,"date":"2020-04-29T12:43:24","date_gmt":"2020-04-29T12:43:05","guid":{"rendered":"http:\/\/www.ebi.ac.uk\/training\/online\/courses\/array-express-quick-tour\/sample-page-2\/"},"modified":"2023-02-03T08:27:18","modified_gmt":"2023-02-03T08:27:18","slug":"what-is-arrayexpress","status":"publish","type":"page","link":"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/array-express-quick-tour\/what-is-arrayexpress\/","title":{"rendered":"What is ArrayExpress?"},"content":{"rendered":"\n<p><strong>ArrayExpress has now moved to be part of BioStudies. Please use this &#8216;<a href=\"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/arrayexpress-in-biostudies\/\">ArrayExpress in BioStudies quick tour<\/a>&#8216; instead.<\/strong><\/p>\n\n\n\n<p><a rel=\"noreferrer noopener\" href=\"https:\/\/www.ebi.ac.uk\/arrayexpress\/\" target=\"_blank\">ArrayExpress<\/a>&nbsp;is a database of&nbsp;functional genomics&nbsp;experiments. The data and information about the experiments are stored according to the&nbsp;<a rel=\"noreferrer noopener\" href=\"http:\/\/fged.org\/projects\/miame\/\" target=\"_blank\">MIAME<\/a>&nbsp;and&nbsp;<a rel=\"noreferrer noopener\" href=\"http:\/\/fged.org\/projects\/minseqe\/\" target=\"_blank\">MINSEQE<\/a>&nbsp;guidelines for&nbsp;microarray&nbsp;and sequencing experiments (Figure 1).<\/p>\n\n\n<div class=\"wp-block-image\">\n<figure class=\"aligncenter size-large\"><img loading=\"lazy\" decoding=\"async\" width=\"700\" height=\"508\" src=\"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/array-express-quick-tour\/wp-content\/uploads\/sites\/68\/2020\/05\/Fig-2.png\" alt=\"\" class=\"wp-image-154\" srcset=\"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/array-express-quick-tour\/wp-content\/uploads\/sites\/68\/2020\/05\/Fig-2.png 700w, https:\/\/www.ebi.ac.uk\/training\/online\/courses\/array-express-quick-tour\/wp-content\/uploads\/sites\/68\/2020\/05\/Fig-2-300x218.png 300w\" sizes=\"auto, (max-width: 700px) 100vw, 700px\" \/><figcaption><strong>Figure <\/strong>1&nbsp;The experiments in ArrayExpress are submitted by researchers or are imported from other functional genomics databases e.g.&nbsp;<a rel=\"noreferrer noopener\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/geo\/\" target=\"_blank\">NCBI GEO<\/a>.<\/figcaption><\/figure><\/div>\n\n\n<h3 class=\"wp-block-heading\">Why do we need ArrayExpress?<\/h3>\n\n\n\n<p>ArrayExpress was established to make data from high-throughput technologies available to the scientific community. It provides easy access to well-annotated functional genomics data in a structured and standardised format, and facilitates sharing.<\/p>\n\n\n\n<h3 class=\"wp-block-heading\">What can I do with ArrayExpress?<\/h3>\n\n\n\n<p>ArrayExpress can be used to:<\/p>\n\n\n\n<ul class=\"wp-block-list\"><li>find functional genomics experiments<\/li><li>download functional genomics data<\/li><li>store your functional genomics data<\/li><\/ul>\n\n\n\n<p><\/p>\n","protected":false},"excerpt":{"rendered":"<p>ArrayExpress has now moved to be part of BioStudies. Please use this &#8216;ArrayExpress in BioStudies quick tour&#8216; instead. ArrayExpress&nbsp;is a database of&nbsp;functional genomics&nbsp;experiments. The data and information about the experiments are stored according to the&nbsp;MIAME&nbsp;and&nbsp;MINSEQE&nbsp;guidelines for&nbsp;microarray&nbsp;and sequencing experiments (Figure 1). Why do we need ArrayExpress? ArrayExpress was established to make data from high-throughput technologies available&#8230;<\/p>\n","protected":false},"author":6,"featured_media":0,"parent":0,"menu_order":1,"comment_status":"closed","ping_status":"open","template":"","meta":{"footnotes":""},"class_list":["post-130","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/array-express-quick-tour\/wp-json\/wp\/v2\/pages\/130","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/array-express-quick-tour\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/array-express-quick-tour\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/array-express-quick-tour\/wp-json\/wp\/v2\/users\/6"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/array-express-quick-tour\/wp-json\/wp\/v2\/comments?post=130"}],"version-history":[{"count":9,"href":"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/array-express-quick-tour\/wp-json\/wp\/v2\/pages\/130\/revisions"}],"predecessor-version":[{"id":423,"href":"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/array-express-quick-tour\/wp-json\/wp\/v2\/pages\/130\/revisions\/423"}],"wp:attachment":[{"href":"https:\/\/www.ebi.ac.uk\/training\/online\/courses\/array-express-quick-tour\/wp-json\/wp\/v2\/media?parent=130"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}