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Analysing and evaluating macromolecular models

Model quality assessment

    • Course overview
    • Search within this course
    • Introduction to model quality assessment
      • Types of models and their sources
        • Experimental methods
        • Computational models
        • Test your knowledge
    • Global quality assessment
      • Global vs. Local assessment
      • Key global validation metrics
        • Key metrics based on experimental data fit
          • For X-ray crystallography structures
          • For cryo-EM models
          • For NMR models
          • For AlphaFold models
        • Metrics based on stereochemistry
          • Tools for stereochemical validation
      • Finding global metrics in the PDB
        • Validation slider
          • Hands-on: Interpreting the PDB validation slider
        • The PDB Validation Report
          • What to look for in the validation report
            • Method specific
            • Hands-on: Assessing individual outliers
            • Walkthrough: Visualising validation metrics on structure
      • Other important considerations for global assessment
      • Summary
      • Test your knowledge
    • Local quality assessment
      • Visual inspection
        • Hands-on: Ligand validation
      • Specific aspects of local assessment
      • Putting it all together
      • Other important considerations
        • Hands-on: Choosing the best structure for your needs
      • Summary
      • Test your knowledge
    • Key takeaways
    • Crosscheck with a crossword
    • Further reading
    • Acknowledgements
    • Your feedback

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