Getting data from InterPro
In addition to the web-based sequence and text searches, you can download both the InterPro data and the InterProScan analysis tool via anonymous FTP and run InterProScan locally. We would recommend this if you have a large number of searches to perform, or are concerned about confidentiality. Additional files that are available on the FTP site include a list of all InterPro entries of each type, a file of InterPro mappings to GO terms, and a list of InterPro hits in UniProtKB. The database and matches are available in XML format with a corresponding document type definition (DTD) file.