Introduction to ChIP-Seq data and analysis


In this lecture, Bori Gerle, a postdoctoral fellow in the Luscombe Group at EMBL-EBI, gives an introduction to ChIP-seq data and its analysis.

The lecture was followed by a practical; the handout and the code for this practical are provided.  The dataset used for this practical is taken from Kasowski et al,(2010), Science 238(232-235).  The dataset is available at GEO, accession number: GSE19486.

ble at GEO

In order to follow this practical you will need to install the following Bioconductor packages in your R session:

In addition, you will need to install the Integrated Genome Browser (IGB) to visualise the results of the practical.