Introduction to ChIP-Seq data and analysis
In this lecture, Bori Gerle, a postdoctoral fellow in the Luscombe Group at EMBL-EBI, gives an introduction to ChIP-seq data and its analysis.
Click here to watch the video (37 minutes)
The lecture was followed by a practical; the handout and the code for this practical are provided. The dataset used for this practical is taken from Kasowski et al,(2010), Science 238(232-235). The dataset is available at GEO, accession number: GSE19486.
ble at GEO
In order to follow this practical you will need to install the following Bioconductor packages in your R session:
In addition, you will need to install the Integrated Genome Browser (IGB) to visualise the results of the practical.