Learn more

Where to find out more...

  • Functional genomics  is a website that contains information on courses, meetings, congresses and more on functional genomics
  • Functional genomics group at the EBI is the website of the group that develops and mantains the EBI functional genomics resources
  • Ensembl  is a genome databases for vertebrates and other eukaryotic species
  • Uniprot  is a resource for protein sequence and functional information
  • GEO  is a public functional genomics data repository at the NCBI
  • Stanford microarray database  is a database of microarray experiments, and the corresponding image files
  • Interpro  is a database used for the classification and automatic annotation of proteins and genomes
  • Gene Ontology provides an ontology of defined terms representing gene product properties
  • PubMed  is a service of the U.S. National Library of Medicine that includes over 19 million citations from MEDLINE and other life science journals
  • Bioconductor Case Studies. Series: Use R! Hahne, F; Huber, W.; Gentleman, R.; Falcon, S. Springer, 2008
  • Microarray Technology in Practice. Russell, S.; Meadows, L.A., Russell, R.R. Academic Press, 2008
  • Bioinformatics and Computational Biology Solutions Using R and Bioconductor. Series: Statistics for Biology and Health, Gentleman, R.; Carey, V.; Huber, W.; Irizarry, R.; Dudoit, S. (Eds.). Springer, 200
  • Microarray Gene Expression Data Analysis – a Beginner’s Guide. Causton H., Quackenbush J., Brazma A., Blackwell Publishing, 2003

Examples of data analysis software

  • Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data.
  • TM4 MeV is a desktop application for the analysis, visualization and data-mining of large-scale genomic data.
  • GenePattern is a powerful genomic analysis platform for gene expression, SNP and RNA-seq analysis, and common data processing tasks.

Recommended courses

Courses at the EBI

On-line courses