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SymbNET: From metagenomics to metabolic interactions

    • Overview
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    • Course content
    • Introduction to metagenomics
      • Introduction to metagenomics analyses
      • Experimental considerations of metagenomics pipelines
    • Metagenomic assembly and MAG generation
      • Tools for metagenomic assembly
      • Tools for MAG generation
    • Classification and annotation of viral MAGs
      • Classification and annotation of viral MAGs
      • MGnify MAG catalogues
    • Tools for plasmid detection
    • Metabolomics: understanding the chemical language of microbes, their communities and beyond
      • Introduction into metabolomics analyses with a focus on microbes
      • Experimental considerations of metabolomics pipelines
      • Analysis of metabolomics data (molecular networking)
      • Analysis of metabolomics data (pathway mapping, chemical and pathway enrichment analysis)
    • From MAGs to community-scale metabolic models
      • Introduction into genome-scale metabolic modelling/FBA
      • metaGEM from MAGs to predicting metabolic interactions in microbial communities with metabolic modelling
    • Trainer biographies
    • Further learning
    • Technical help sheet
    • Your feedback