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SymbNET: From metagenomics to metabolic interactions

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SymbNET: From metagenomics to metabolic interactions

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Course content
Introduction to metagenomics
- Introduction to metagenomics analyses
- Experimental considerations of metagenomics pipelines
Metagenomic assembly and MAG generation
- Tools for metagenomic assembly
- Tools for MAG generation
Classification and annotation of viral MAGs
- Classification and annotation of viral MAGs
- MGnify MAG catalogues
Tools for plasmid detection
Metabolomics: understanding the chemical language of microbes, their communities and beyond
From MAGs to community-scale metabolic models
- Introduction into genome-scale metabolic modelling/FBA
- metaGEM from MAGs to predicting metabolic interactions in microbial communities with metabolic modelling
Trainer biographies
Further learning
Technical help sheet
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All materials are free cultural works licensed under a Creative Commons Attribution 4.0 International (CC BY 4.0) license, except where further licensing details are provided.

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