{"id":1661,"date":"2023-11-10T13:48:51","date_gmt":"2023-11-10T13:48:28","guid":{"rendered":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials-temp-2023v2\/day-4\/completing-predicted-structures-using-alphafill\/"},"modified":"2026-01-12T14:32:26","modified_gmt":"2026-01-12T14:32:26","slug":"completing-predicted-structures-using-alphafill","status":"publish","type":"page","link":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/protein-structure-prediction-and-molecular-docking\/completing-predicted-structures-using-alphafill\/","title":{"rendered":"Completing predicted structures using AlphaFill and AlphaBridge"},"content":{"rendered":"\n<p class=\"wp-block-paragraph\"><strong>Trainer:<\/strong> Robbie Joosten<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Overview:<\/strong><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">This lecture provides an introduction to AlphaFill and AlphaBridge software for completing AlphaFold-predicted protein structures by predicting and adding cofactors, ions and other small molecules.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Learning outcomes:<\/strong><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">By the end of this session you will be able to:<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Complete AI-predicted protein structures using AlphaFill and AlphaBridge<\/li>\n<\/ul>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Materials<\/strong>: Link to <a href=\"https:\/\/ftp.ebi.ac.uk\/pub\/training\/2025\/Structural_bioinformatics_2025\/Day_3\/20251029_Structural_Bioinformatics_alphafill_alphabridge.pptx\" target=\"_blank\" rel=\"noreferrer noopener\">PDF slides<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Link to practical <a href=\"https:\/\/ftp.ebi.ac.uk\/pub\/training\/2025\/Structural_bioinformatics_2025\/Day_3\/tutorial_AlphaFill2025.pdf\" target=\"_blank\" rel=\"noreferrer noopener\">PDF<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Recorded lecture:<\/p>\n\n\n\n<iframe loading=\"lazy\" src=\"https:\/\/embl-ebi.cloud.panopto.eu\/Panopto\/Pages\/Embed.aspx?id=41072598-5694-4afb-a710-af33010c3882&amp;autoplay=false&amp;offerviewer=true&amp;showtitle=true&amp;showbrand=true&amp;captions=false&amp;interactivity=all\" height=\"405\" width=\"720\" style=\"border: 1px solid #464646;\" allowfullscreen=\"\" allow=\"autoplay\" aria-label=\"Panopto Embedded Video Player\"><\/iframe>\n","protected":false},"excerpt":{"rendered":"<p>Trainer: Robbie Joosten Overview: This lecture provides an introduction to AlphaFill and AlphaBridge software for completing AlphaFold-predicted protein structures by predicting and adding cofactors, ions and other small molecules. Learning outcomes: By the end of this session you will be able to: Materials: Link to PDF slides Link to practical PDF Recorded lecture:<\/p>\n","protected":false},"author":32,"featured_media":0,"parent":15,"menu_order":4,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-1661","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/pages\/1661","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/users\/32"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/comments?post=1661"}],"version-history":[{"count":6,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/pages\/1661\/revisions"}],"predecessor-version":[{"id":1915,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/pages\/1661\/revisions\/1915"}],"up":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/pages\/15"}],"wp:attachment":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/media?parent=1661"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}