{"id":1318,"date":"2022-02-02T14:10:51","date_gmt":"2022-02-02T14:10:32","guid":{"rendered":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/day-3\/pdbe-tools-in-depth-analysis-of-protein-structure\/"},"modified":"2026-01-12T13:53:02","modified_gmt":"2026-01-12T13:53:02","slug":"pdbe-knowledgebase","status":"publish","type":"page","link":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/macromolecular-structure-databases-tools-and-visualisation\/pdbe-knowledgebase\/","title":{"rendered":"PDBe-KnowledgeBase"},"content":{"rendered":"\n<p><strong>Trainer:<\/strong> Joseph Ellaway, <a href=\"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/trainer-biographies\/\" target=\"_blank\" rel=\"noreferrer noopener\">David Armstrong, Sudakshina Ganguly and Genevieve Evans<\/a><\/p>\n\n\n\n<p><strong>Overview: <\/strong>This lecture covers the PDBe-KnowledgeBase, its functionality and use for quickly viewing and interpreting macromolecular structure data. <\/p>\n\n\n\n<p><strong>Learning outcomes:<\/strong><\/p>\n\n\n\n<p>By the end of this session you will be able to:<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Navigate the PDBe-KnowledgeBase to search and view aggregated protein information, from sequences to available experimental models.<\/li>\n<\/ul>\n\n\n\n<p><strong>Materials: <\/strong><\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li><a href=\"https:\/\/ftp.ebi.ac.uk\/pub\/training\/2025\/Structural_bioinformatics_2025\/Day_3\/PDBe%20Knowledge%20Base.pptx\" target=\"_blank\" rel=\"noreferrer noopener\">Link to presentation slides <\/a><\/li>\n\n\n\n<li>Recorded PDBe-KB recorded lecture:<\/li>\n<\/ul>\n\n\n\n<iframe loading=\"lazy\" src=\"https:\/\/embl-ebi.cloud.panopto.eu\/Panopto\/Pages\/Embed.aspx?id=04c91ea4-ba05-4dce-a4eb-af3401197cbe&amp;autoplay=false&amp;offerviewer=true&amp;showtitle=true&amp;showbrand=true&amp;captions=false&amp;interactivity=all\" height=\"405\" width=\"720\" style=\"border: 1px solid #464646;\" allowfullscreen=\"\" allow=\"autoplay\" aria-label=\"Panopto Embedded Video Player\"><\/iframe>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Tutorial <a href=\"https:\/\/ftp.ebi.ac.uk\/pub\/training\/2023\/Structural_bioinformatics_2023\/Day_4\/PDBe-KB\/PDBe_PDBe-KB%20tutorial.pdf\" target=\"_blank\" rel=\"noreferrer noopener\">PDF<\/a> and <a href=\"https:\/\/ftp.ebi.ac.uk\/pub\/training\/2023\/Structural_bioinformatics_2023\/Day_4\/PDBe-KB\/PDBe_PDBe-KB%20tutorial.docx\" target=\"_blank\" rel=\"noreferrer noopener\">document<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/ftp.ebi.ac.uk\/pub\/training\/2025\/Structural_bioinformatics_2025\/Day_2\/Copy%20of%20PDBe-KB_%20mini%20case%20study.docx\">Case study tutorial<\/a><\/li>\n<\/ul>\n\n\n\n<p><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Trainer: Joseph Ellaway, David Armstrong, Sudakshina Ganguly and Genevieve Evans Overview: This lecture covers the PDBe-KnowledgeBase, its functionality and use for quickly viewing and interpreting macromolecular structure data. Learning outcomes: By the end of this session you will be able to: Materials:<\/p>\n","protected":false},"author":18,"featured_media":0,"parent":14,"menu_order":2,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-1318","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/pages\/1318","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/users\/18"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/comments?post=1318"}],"version-history":[{"count":10,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/pages\/1318\/revisions"}],"predecessor-version":[{"id":1899,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/pages\/1318\/revisions\/1899"}],"up":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/pages\/14"}],"wp:attachment":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/media?parent=1318"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}