{"id":1316,"date":"2022-02-02T14:10:51","date_gmt":"2022-02-02T14:10:22","guid":{"rendered":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/day-3\/pdbe-finding-and-visualising-structural-data-and-validating-assessing-structures\/"},"modified":"2026-01-12T13:39:49","modified_gmt":"2026-01-12T13:39:49","slug":"pdbe-finding-and-visualising-structural-data-and-validating-assessing-structures","status":"publish","type":"page","link":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/macromolecular-structure-databases-tools-and-visualisation\/pdbe-finding-and-visualising-structural-data-and-validating-assessing-structures\/","title":{"rendered":"Structure validation and PDB-Redo"},"content":{"rendered":"\n<p class=\"wp-block-paragraph\"><strong>Trainers: <\/strong><a rel=\"noreferrer noopener\" href=\"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/trainer-biographies\/\" target=\"_blank\">Robbie Joosten<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Overview:<\/strong><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">This lecture provides an overview of model validation and tips to ensure models represent the experimental data used to produce them, and covers the PDB-REDO project.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Learning outcomes:<\/strong><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">By the end of this session you will be able to:<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>List the different parameters to investigate when validating a macromolecule\u2019s atomic model derived from experimental data.<\/li>\n\n\n\n<li>Define the PDB-REDO project and its role in PDBe<\/li>\n<\/ul>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Materials<\/strong><\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><a href=\"https:\/\/ftp.ebi.ac.uk\/pub\/training\/2023\/Structural_bioinformatics_2023\/Day_2\/Structure%20validation%20and%20PDB-Redo\/20231003_Structural_Bioinformatics_model_validation_PDB-REDO.pptx\" target=\"_blank\" rel=\"noreferrer noopener\">Link to presentation slides<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><a href=\"https:\/\/ftp.ebi.ac.uk\/pub\/training\/2025\/Structural_bioinformatics_2025\/Day_2\/20251028_Structural_Bioinformatics_model_validation_PDB-REDO.pptx\" target=\"_blank\" rel=\"noreferrer noopener\">Link to presentation PDF<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Recorded lecture:<\/p>\n\n\n\n<iframe loading=\"lazy\" src=\"https:\/\/embl-ebi.cloud.panopto.eu\/Panopto\/Pages\/Embed.aspx?id=fcc6dc0e-f4ff-436b-a6d1-af320114fcab&amp;autoplay=false&amp;offerviewer=true&amp;showtitle=true&amp;showbrand=true&amp;captions=false&amp;interactivity=all\" height=\"405\" width=\"720\" style=\"border: 1px solid #464646;\" allowfullscreen=\"\" allow=\"autoplay\" aria-label=\"Panopto Embedded Video Player\"><\/iframe>\n\n\n\n<p class=\"wp-block-paragraph\"><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Trainers: Robbie Joosten Overview: This lecture provides an overview of model validation and tips to ensure models represent the experimental data used to produce them, and covers the PDB-REDO project. Learning outcomes: By the end of this session you will be able to: Materials Link to presentation slides Link to presentation PDF Recorded lecture:<\/p>\n","protected":false},"author":18,"featured_media":0,"parent":14,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-1316","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/pages\/1316","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/users\/18"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/comments?post=1316"}],"version-history":[{"count":7,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/pages\/1316\/revisions"}],"predecessor-version":[{"id":1881,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/pages\/1316\/revisions\/1881"}],"up":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/pages\/14"}],"wp:attachment":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/media?parent=1316"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}