{"id":1308,"date":"2022-02-02T14:08:51","date_gmt":"2022-02-02T14:08:50","guid":{"rendered":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/day-2\/sequence-classification-pfam-and-interpro\/"},"modified":"2026-01-12T13:38:13","modified_gmt":"2026-01-12T13:38:13","slug":"sequence-classification-pfam-and-interpro","status":"publish","type":"page","link":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/sequences-families-and-folds\/sequence-classification-pfam-and-interpro\/","title":{"rendered":"Sequence classification: Pfam and InterPro"},"content":{"rendered":"\n<p class=\"wp-block-paragraph\"><strong>Trainers:<\/strong> Antonina Andreeva, <a href=\"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/trainer-biographies\/\" target=\"_blank\" rel=\"noreferrer noopener\">Typhaine Paysan-Lafosse &amp; Sara Chuguransky<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Overview: <\/strong>In this lecture and practical the structural family resources HMMER, InterPro and Pfam are covered, which together hold protein families, domains, functional sites and predicted sites.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Learning objectives:<\/strong><\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Recognise Pfam website features and functionalites<\/li>\n\n\n\n<li>Perform different types of search on the Pfam website<\/li>\n\n\n\n<li>Interpret information output from Pfam website searches<\/li>\n\n\n\n<li>Explain different protein models algorithm<\/li>\n\n\n\n<li>Perform a protein sequence analysis<\/li>\n\n\n\n<li>Use InterPro efficiently<\/li>\n<\/ul>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Materials: <\/strong><\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li><a href=\"https:\/\/ftp.ebi.ac.uk\/pub\/training\/2025\/Structural_bioinformatics_2025\/Day_2\/Structural%20Bioinformatics%20InterPro%202025.pptx\" target=\"_blank\" rel=\"noreferrer noopener\">Presentation slides<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/ftp.ebi.ac.uk\/pub\/training\/2023\/Structural_bioinformatics_2023\/Day_2\/Protein%20folds%20and%20structural%20family%20resources\/Structural%20bioinformatics%20-%20sequence%20classification%20-%20Hands-on%202023.docx\" target=\"_blank\" rel=\"noreferrer noopener\">Tutorial sheet<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/ftp.ebi.ac.uk\/pub\/training\/2023\/Structural_bioinformatics_2023\/Day_2\/Protein%20folds%20and%20structural%20family%20resources\/Structural%20bioinformatics%20-%20sequence%20classification%20-%20Hands-on%202023%20correction.pptx\" target=\"_blank\" rel=\"noreferrer noopener\">Tutorial review slides<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/ftp.ebi.ac.uk\/pub\/training\/2025\/Structural_bioinformatics_2025\/Day_2\/Structural%20bioinformaics%202025%20-%20Hands-on%202025.docx\">2025 hands-on tutorial<\/a><\/li>\n<\/ul>\n\n\n\n<p class=\"wp-block-paragraph\"><\/p>\n\n\n\n<p class=\"wp-block-paragraph\"> <li>2022 edition recorded lecture:<\/li> <\/p>\n\n\n\n<iframe loading=\"lazy\" src=\"https:\/\/embl-ebi.cloud.panopto.eu\/Panopto\/Pages\/Embed.aspx?id=8072d222-ad90-45c5-b814-af32011540a6&amp;autoplay=false&amp;offerviewer=true&amp;showtitle=true&amp;showbrand=true&amp;captions=false&amp;interactivity=all\" height=\"405\" width=\"720\" style=\"border: 1px solid #464646;\" allowfullscreen=\"\" allow=\"autoplay\" aria-label=\"Panopto Embedded Video Player\"><\/iframe>\n\n\n\n<ul class=\"wp-block-list\"><li><a rel=\"noreferrer noopener\" href=\"https:\/\/drive.google.com\/file\/d\/10xd63nyGRypWBZYAN9dOyL9eDUCGHgvI\/view?usp=sharing\" target=\"_blank\"><a rel=\"noreferrer noopener\" href=\"https:\/\/docs.google.com\/presentation\/d\/13EMLScd7Z1db_pPdbmi68ItHu9BTQH7EoD9aQxGvYxU\/edit?usp=sharing\" data-type=\"URL\" data-id=\"https:\/\/docs.google.com\/presentation\/d\/13EMLScd7Z1db_pPdbmi68ItHu9BTQH7EoD9aQxGvYxU\/edit?usp=sharing\" target=\"_blank\">Presentation slides<\/a><\/a><\/li><li><a rel=\"noreferrer noopener\" href=\"https:\/\/drive.google.com\/file\/d\/10xd63nyGRypWBZYAN9dOyL9eDUCGHgvI\/view?usp=sharing\" target=\"_blank\"><a rel=\"noreferrer noopener\" href=\"https:\/\/docs.google.com\/document\/d\/1FowVHZJC6oKnUIKdsnV-h5RuyR7OOGTXCQmbaQUG_NY\/edit?usp=sharing\" target=\"_blank\">Hands-on exercises<\/a><\/a><\/li><li><a rel=\"noreferrer noopener\" href=\"https:\/\/drive.google.com\/file\/d\/10xd63nyGRypWBZYAN9dOyL9eDUCGHgvI\/view?usp=sharing\" target=\"_blank\"><a rel=\"noreferrer noopener\" href=\"https:\/\/docs.google.com\/presentation\/d\/1n0JRVK9BCj-HOEVBerycaf3RiscuXVrPpyJ9tdn2meE\/edit?usp=drive_link\" target=\"_blank\">Hands-on answers<\/a><\/a><\/li><\/ul>\n","protected":false},"excerpt":{"rendered":"<p>Trainers: Antonina Andreeva, Typhaine Paysan-Lafosse &amp; Sara Chuguransky Overview: In this lecture and practical the structural family resources HMMER, InterPro and Pfam are covered, which together hold protein families, domains, functional sites and predicted sites. Learning objectives: Materials: 2022 edition recorded lecture: Presentation slides Hands-on exercises Hands-on answers<\/p>\n","protected":false},"author":18,"featured_media":0,"parent":13,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-1308","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/pages\/1308","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/users\/18"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/comments?post=1308"}],"version-history":[{"count":10,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/pages\/1308\/revisions"}],"predecessor-version":[{"id":1877,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/pages\/1308\/revisions\/1877"}],"up":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/pages\/13"}],"wp:attachment":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/media?parent=1308"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}