{"id":11,"date":"2021-04-14T14:01:51","date_gmt":"2021-04-14T14:01:45","guid":{"rendered":"https:\/\/www.ebi.ac.uk\/training\/materials\/template\/programme\/"},"modified":"2026-01-12T13:20:59","modified_gmt":"2026-01-12T13:20:59","slug":"course-content","status":"publish","type":"page","link":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/course-content\/","title":{"rendered":"Course content"},"content":{"rendered":"\n

To see details about the live Structural bioinformatics course and the original programme, you can refer to the course page and programme.<\/a><\/p>\n\n\n\n

The contents table below outlines the different sessions that were included in the course, as well as the format of the materials (presentations, videos, practicals etc.) and each session\u2019s trainers. Either proceed through the materials using the arrows at the end of each page or pick your topic of interest from the table below to skip straight to it. <\/p>\n\n\n\n

\"\" Presentation slides \u2013  View or download the slides<\/p>\n\n\n\n

\"\" Recorded lectures \u2013 Watch the lecture videos <\/p>\n\n\n\n

\"\" Practicals \u2013 View or download the slides, exercises, datasets, analysis scripts and results<\/p>\n\n\n\n

Format<\/strong><\/td>Subject<\/strong><\/td>Trainer<\/strong><\/td><\/tr>
<\/td>Intro to<\/strong> structural biology data and sequences<\/strong><\/td><\/td><\/tr>
\"\"<\/td>Introduction to structural biology data<\/a><\/td>Jennifer Fleming, Sameer Velankar and Jack Turner<\/td><\/tr>
<\/td>A Primer on Structural biology<\/a><\/td>Paulyna Maga\u00f1a<\/td><\/tr>
\"\"\"\"<\/td>Sequences: Alignments and Annotation<\/a><\/td>
Fabio Madeira, Pedro Raposo and Nandana Madhusoodanan<\/td><\/tr>
<\/td>Sequences, families, and folds<\/strong><\/td><\/td><\/tr>
\"\"\"\" \"\"<\/td>Sequence classification: Pfam and InterPro<\/a><\/td>Antonina Andreeva, Typhaine Paysan-Lafosse & Sara Chuguransky<\/td><\/tr>
\"\"<\/td>CATH DB \u2013 Protein folds and structural family resources<\/a><\/td>Ian Sillitoe<\/td><\/tr>
\"\"\"\"<\/td>Structural informatics Past and present<\/a><\/td>Janet Thornton<\/td><\/tr>
<\/td>Macromolecular structure databases, tools, and visualisation<\/strong><\/td><\/td><\/tr>
\"\"\"\"<\/td>Structure validation and PDB-Redo<\/a><\/td>Robbie Joosten<\/td><\/tr>
\"\"\"\"\"\"<\/td>PDBe and Molstar<\/a><\/td>David Armstrong, Sudakshina Ganguly and Genevieve Evans <\/td><\/tr>
\"\"\"\"<\/td>PDBe-KnowledgeBase<\/a><\/td>David Armstrong, Sudakshina Ganguly and Genevieve Evans<\/td><\/tr>
\"\"\"\"\"\"<\/td>EMDB<\/a><\/td>Miao Ma, Minoosadat Tayebinia, Kyle Morris, Miao Ma, Zhe Wang, Jack Turner<\/td><\/tr>
\"\"<\/td>Molecular visualisation for structural biology<\/a><\/td>Isabel Romero Calvo and Tabea Rauscher<\/td><\/tr>
<\/td>Protein structure prediction and molecular docking<\/strong><\/td><\/td><\/tr>
\"\"\"\" <\/td>Modelling protein structure and missense variants: Phyre2 and Missense3D in the context of AlphaFold models<\/a><\/td><\/a>Michael Sternberg, Harry Powell and Alessia David<\/td><\/tr>
\"\"\"\"<\/td>AlphaFold database and ColabFold<\/a><\/td>Paulyna Maga\u00f1a<\/td><\/tr>
\"\"\"\"<\/td>Completing predicted structures using AlphaFill<\/a><\/td>Robbie Joosten<\/td><\/tr>
\"\"\"\"<\/td>Solving 3D puzzles of biomolecular interactions by integrative modelling – HADDOCK<\/a><\/td><\/a>Alexandre Bonvin, Rapha\u00eblle Versini, and Marco Giulini<\/td><\/tr>
<\/td>Bioactive molecules<\/strong> and disorder<\/strong><\/td><\/td><\/tr>
\"\"<\/td>Ligand structural biology with ChEMBL<\/a><\/td>Sybilla Corbett, Melissa Adasme, Ines Smit, and Emma Manners<\/td><\/tr>
<\/td>AI to predict disordered proteins<\/a><\/td>B\u00e1lint M\u00e9sz\u00e1ros<\/td><\/tr>
<\/td>Introduction to Molecular Dynamics simulations<\/a><\/td>Sarah Harris<\/td><\/tr><\/tbody><\/table><\/figure>\n\n\n\n

<\/p>\n","protected":false},"excerpt":{"rendered":"

To see details about the live Structural bioinformatics course and the original programme, you can refer to the course page and programme. The contents table below outlines the different sessions that were included in the course, as well as the format of the materials (presentations, videos, practicals etc.) and each session\u2019s trainers. Either proceed through the…<\/p>\n","protected":false},"author":12,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-11","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/pages\/11","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/users\/12"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/comments?post=11"}],"version-history":[{"count":88,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/pages\/11\/revisions"}],"predecessor-version":[{"id":1857,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/pages\/11\/revisions\/1857"}],"wp:attachment":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/structural-bioinformatics-materials\/wp-json\/wp\/v2\/media?parent=11"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}