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Structural bioinformatics

    • Overview
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    • Course content
    • Structural biology data and sequences
      • A primer on Structural biology
      • Introduction to structural biology data
      • Sequences: Alignments and Annotation
    • Sequences, families and folds
      • Sequence classification: Pfam and InterPro
      • CATH DB – Protein folds and structural family resources
      • Structural informatics: Past and present
    • Macromolecular structure databases, tools and visualisation
      • Structure validation and PDB-Redo
      • PDBe and Molstar
      • PDBe-KnowledgeBase
      • EMDB
      • Molecular visualisation for Structural biology
    • Protein structure prediction and molecular docking
      • Modelling protein structure and missense variants: Phyre2 and Missense3D in the context of AlphaFold models
      • AlphaFold Database and ColabFold
      • Completing predicted structures using AlphaFill and AlphaBridge
      • Exploring protein docking with HADDOCK
      • Introduction to Molecular Dynamics Simulations
    • Bioactive molecules and disorder
      • Ligand structural biology with ChEMBL
      • AI to predict disordered proteins
    • Technical help sheets
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