From fasta to matrix

Trainer: Jonathan Manning

Overview: This session will cover the available analysis methods for scRNA-seq, the basics QC and file formats.

Learning outcomes:

By the end of the session you will be able to:

  • Repeat matrix generation for any droplet-based single cell sequencing data
  • Apply data combination and metadata editing for particular experimental designs
  • Interpret quality control (QC) plots to make informed decisions on cell thresholds
  • Find relevant information in GTF files for the particulars of their study, and include this in data matrix metadata

Materials: