{"id":2,"date":"2021-04-14T12:01:17","date_gmt":"2021-04-14T12:01:41","guid":{"rendered":"https:\/\/www.ebi.ac.uk\/training\/materials\/template\/?page_id=2"},"modified":"2023-01-10T16:18:22","modified_gmt":"2023-01-10T16:18:22","slug":"course-content","status":"publish","type":"page","link":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-r\/course-content\/","title":{"rendered":"Course content"},"content":{"rendered":"\n

These materials were part of the live ‘Single-Cell RNA-seq Analysis using R’ Course which happened in October 2022. Please refer to the course page and programme<\/a> to check details about this live event and the original programme.<\/p>\n\n\n\n

The content table below outlines the different sessions that were included in the course, as well as the format of the materials (slides\/videos\/practicals) and each session\u2019s trainer. Either proceed through the materials using the arrows at the end of each page or pick your topic of interest from the table below to skip straight to it.<\/p>\n\n\n\n

\"\" Presentation slides \u2013  View or download the slides<\/p>\n\n\n\n

\"\" Recorded lectures \u2013 Watch the lecture videos <\/p>\n\n\n\n

\"\" Practicals \u2013 View or download the slides, exercises, datasets, analysis scripts and results<\/p>\n\n\n\n

Format<\/strong><\/td>Subject<\/strong><\/td>Trainer<\/strong><\/td><\/tr>
<\/td>Planning the experiment<\/a><\/strong><\/td><\/td><\/tr>
\"\"<\/td>Keynote: Cellular heterogeneity in liver and drivers of disease<\/a><\/td>Tallulah Andrews<\/a><\/td><\/tr>
\"\"<\/td>Experimental design<\/a><\/td>Tallulah Andrews<\/a><\/td><\/tr>
\"\"\"\"\"\"<\/td>Droplet-based library generation overview<\/a><\/td>Wendi Bacon<\/a><\/td><\/tr>
\"\"\"\"\"\"<\/td>Pipeline overview<\/a><\/td>Wendi Bacon<\/a><\/td><\/tr>
<\/td>Processing data<\/a><\/strong><\/td><\/td><\/tr>
\"\"<\/td>Getting set up: infrastructure terms<\/a><\/td>Iguaracy Pinheiro de Sousa and\u00a0Daniel O’Hanlon<\/a><\/td><\/tr>
\"\"\"\"<\/td>Raw reads to expression matrix<\/a><\/td>Iguaracy Pinheiro de Sousa and\u00a0Daniel O’Hanlon<\/a><\/td><\/tr>
\"\"\"\"<\/td>Cell atlases & interpretation<\/a><\/td>Nancy George and Enrique Sapena<\/a><\/td><\/tr>
<\/td>Analysing data<\/a><\/strong><\/td><\/td><\/tr>
\"\"<\/td>Designing your analysis<\/a><\/td>Tallulah Andrews<\/a><\/td><\/tr>
\"\"\"\"<\/td>Pre-processing and dimensionality reduction<\/a><\/td>Anna-Maria Cujba and Alsu Missarova<\/a><\/td><\/tr>
\"\"\"\"<\/td>From UMAP to annotation<\/a><\/td>Anna-Maria Cujba and Alsu Missarova<\/a><\/td><\/tr>
\"\"\"\"<\/td>Online tools and follow-up<\/a><\/td>Elo Madissoon<\/a><\/td><\/tr><\/tbody><\/table><\/figure>\n\n\n\n

<\/p>\n","protected":false},"excerpt":{"rendered":"

These materials were part of the live ‘Single-Cell RNA-seq Analysis using R’ Course which happened in October 2022. Please refer to the course page and programme to check details about this live event and the original programme. The content table below outlines the different sessions that were included in the course, as well as the…<\/p>\n","protected":false},"author":2,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"open","template":"","meta":{"footnotes":""},"class_list":["post-2","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-r\/wp-json\/wp\/v2\/pages\/2","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-r\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-r\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-r\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-r\/wp-json\/wp\/v2\/comments?post=2"}],"version-history":[{"count":23,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-r\/wp-json\/wp\/v2\/pages\/2\/revisions"}],"predecessor-version":[{"id":831,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-r\/wp-json\/wp\/v2\/pages\/2\/revisions\/831"}],"wp:attachment":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-r\/wp-json\/wp\/v2\/media?parent=2"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}