EMBL-EBI Training
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Single-cell RNA-seq analysis using R
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Single-cell RNA-seq analysis using R
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Overview
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Course content
Planning the experiment
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Keynote: Cellular heterogeneity in liver and drivers of disease
Droplet-based library generation overview
Pipeline overview
Experimental design
Processing data
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Getting set up: infrastructure terms
Raw reads to expression matrix
Cell atlases & interpretation
Analysing data
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Designing your analysis
Pre-processing and dimensionality reduction
From UMAP to annotation
Online tools and follow-up
Technical help sheets
Trainers biographies
Further learning
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