{"id":377,"date":"2022-08-11T07:26:45","date_gmt":"2022-08-11T07:26:42","guid":{"rendered":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-r-handbook-2022\/programme\/day-3\/pre-processing-and-dimensionality-reduction\/"},"modified":"2026-02-10T15:50:19","modified_gmt":"2026-02-10T15:50:19","slug":"dimensionality-reduction-clustering-and-annotation","status":"publish","type":"page","link":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/analysing-data\/dimensionality-reduction-clustering-and-annotation\/","title":{"rendered":"Dimensionality reduction, clustering, and annotation"},"content":{"rendered":"\n<p><strong>Trainer:<\/strong> Jiawei Wang, Jinzheng Ren, Anna Vathrakokili Pournara<\/p>\n\n\n\n<p><strong>Overview:<\/strong> In this session, you will work on the pre-processing and dimensionality reduction of a given dataset.<\/p>\n\n\n\n<h2 class=\"wp-block-heading\"><strong>Materials<\/strong><\/h2>\n\n\n\n<ul class=\"wp-block-list\">\n<li><a rel=\"noreferrer noopener\" href=\"https:\/\/drive.google.com\/file\/d\/1haeuZvqTSJcQ0nrcbQz3itDcXUM9YKXX\/view?usp=drive_link\" target=\"_blank\">Recorded lecture<\/a><\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li><a href=\"https:\/\/ftp.ebi.ac.uk\/pub\/training\/2025\/Single_cell_rna_seq_analysis_using_python_2025\/Presentations\/Single-cellRNA-seq_Day2_AnnaVP.pptx\" data-type=\"link\" data-id=\"https:\/\/ftp.ebi.ac.uk\/pub\/training\/2024\/ScRNA-seq-analysis-using-Python-2024\/6-Sc-RNA-seq_analysis\/3-Feature_selection_DR_clustering_annotation\/featuere-selection-DR-clustering-annotation.pdf\">Presentation slides<\/a><\/li>\n<\/ul>\n\n\n\n<h2 class=\"wp-block-heading\"><strong>Practical<\/strong><\/h2>\n\n\n\n<ul class=\"wp-block-list\">\n<li><a href=\"https:\/\/github.com\/Functional-Genomics\/scRNA-seq_python_course_2024\">GitHub repository<\/a><\/li>\n<\/ul>\n\n\n\n<p><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Trainer: Jiawei Wang, Jinzheng Ren, Anna Vathrakokili Pournara Overview: In this session, you will work on the pre-processing and dimensionality reduction of a given dataset. Materials Practical<\/p>\n","protected":false},"author":6,"featured_media":0,"parent":1953,"menu_order":1,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-377","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/pages\/377","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/users\/6"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/comments?post=377"}],"version-history":[{"count":27,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/pages\/377\/revisions"}],"predecessor-version":[{"id":2369,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/pages\/377\/revisions\/2369"}],"up":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/pages\/1953"}],"wp:attachment":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/media?parent=377"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}