{"id":275,"date":"2022-08-04T15:22:34","date_gmt":"2022-08-04T15:22:34","guid":{"rendered":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-r-handbook-2022\/programme\/day-1\/experimental-design\/"},"modified":"2026-03-10T11:23:15","modified_gmt":"2026-03-10T11:23:15","slug":"experimental-design","status":"publish","type":"page","link":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/planing-your-experiment\/experimental-design\/","title":{"rendered":"Experimental design"},"content":{"rendered":"\n<p><strong>Trainer:<\/strong>&nbsp;Tallulah Andrews<\/p>\n\n\n\n<p><strong>Overview:<\/strong>&nbsp;In this training session, the trainer discusses the pros and cons of different single-cell RNAseq platforms and how to design your experiment to avoid confounding factors. In addition, I will discuss when and where to apply different analysis tools and how inappropriate use of these tools can lead to false conclusions.<\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Materials<\/h2>\n\n\n\n<p>Please watch the pre-recording&nbsp;of this talk:<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li><a href=\"https:\/\/embl-ebi.cloud.panopto.eu\/Panopto\/Pages\/Viewer.aspx?id=28522811-6cc8-47c5-ac0c-b1e5013858ea&amp;start=0\" data-type=\"link\" data-id=\"https:\/\/embl-ebi.cloud.panopto.eu\/Panopto\/Pages\/Viewer.aspx?id=28522811-6cc8-47c5-ac0c-b1e5013858ea&amp;start=0\">Recorded lecture<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/ftp.ebi.ac.uk\/pub\/training\/2026\/Single_cell_rna_seq_analysis_with_python_2026\/Presentations\/EBI_Experimental_Design_2026.pptx\">Presentation slides<\/a><\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>Trainer:&nbsp;Tallulah Andrews Overview:&nbsp;In this training session, the trainer discusses the pros and cons of different single-cell RNAseq platforms and how to design your experiment to avoid confounding factors. In addition, I will discuss when and where to apply different analysis tools and how inappropriate use of these tools can lead to false conclusions. Materials Please&#8230;<\/p>\n","protected":false},"author":6,"featured_media":0,"parent":1937,"menu_order":2,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-275","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/pages\/275","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/users\/6"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/comments?post=275"}],"version-history":[{"count":23,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/pages\/275\/revisions"}],"predecessor-version":[{"id":2409,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/pages\/275\/revisions\/2409"}],"up":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/pages\/1937"}],"wp:attachment":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/media?parent=275"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}