{"id":2075,"date":"2023-09-28T10:08:49","date_gmt":"2023-09-28T10:08:49","guid":{"rendered":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-phyton-materials\/technical-help-sheet\/"},"modified":"2025-03-18T12:02:24","modified_gmt":"2025-03-18T12:02:24","slug":"technical-help-sheet","status":"publish","type":"page","link":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/technical-help-sheet\/","title":{"rendered":"Technical help sheet"},"content":{"rendered":"\n<h2 class=\"wp-block-heading\">Technical requirements for data analysis<\/h2>\n\n\n\n<p>You will require the following tools for executing the practicals in this course:<\/p>\n\n\n\n<figure class=\"wp-block-table is-style-regular\"><table><tbody><tr><td>GitHub repository<\/td><td><a href=\"https:\/\/github.com\/Functional-Genomics\/scRNA-seq_python_course_2024\/tree\/main\">https:\/\/github.com\/Functional-Genomics\/scRNA-seq_python_course_2024\/tree\/main<\/a><\/td><\/tr><tr><td>Web Browser (preferably Firefox)<\/td><td><a href=\"https:\/\/www.mozilla.org\/en-GB\/firefox\/new\/\">https:\/\/www.mozilla.org\/en-GB\/firefox\/new\/<\/a><\/td><\/tr><tr><td>Git version control system<\/td><td><a href=\"https:\/\/git-scm.com\/\">https:\/\/git-scm.com\/<\/a><\/td><\/tr><tr><td>Jupyter Notebook<\/td><td>please see environment files in <a href=\"https:\/\/github.com\/Functional-Genomics\/scRNA-seq_python_course_2024\/tree\/main\/Demonstrations\">https:\/\/github.com\/Functional-Genomics\/scRNA-seq_python_course_2024\/tree\/main\/Demonstrations<\/a><\/td><\/tr><tr><td>Python and specific Python packages, in separate conda envs<\/td><td>please see environment files in <a href=\"https:\/\/github.com\/Functional-Genomics\/scRNA-seq_python_course_2024\/tree\/main\/Demonstrations\">https:\/\/github.com\/Functional-Genomics\/scRNA-seq_python_course_2024\/tree\/main\/Demonstrations<\/a><\/td><\/tr><tr><td>R, Python and specific packages in one conda environment<\/td><td>Please see environment files here: <a href=\"https:\/\/github.com\/Functional-Genomics\/scRNA-seq_python_course_2024\/tree\/main\/Demonstrations\">https:\/\/github.com\/Functional-Genomics\/scRNA-seq_python_course_2024\/tree\/main\/Demonstrations<\/a><\/td><\/tr><\/tbody><\/table><\/figure>\n\n\n\n<p>In addition, we provide the <a href=\"https:\/\/ftp.ebi.ac.uk\/pub\/training\/2025\/Single_cell_rna_seq_analysis_using_python_2025\/scrnaseq2024.sif\">Singularity container containing all tools and dependencies<\/a> used for this course. It is a large single file around 10 GB in size.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Technical requirements for data analysis You will require the following tools for executing the practicals in this course: GitHub repository https:\/\/github.com\/Functional-Genomics\/scRNA-seq_python_course_2024\/tree\/main Web Browser (preferably Firefox) https:\/\/www.mozilla.org\/en-GB\/firefox\/new\/ Git version control system https:\/\/git-scm.com\/ Jupyter Notebook please see environment files in https:\/\/github.com\/Functional-Genomics\/scRNA-seq_python_course_2024\/tree\/main\/Demonstrations Python and specific Python packages, in separate conda envs please see environment files in https:\/\/github.com\/Functional-Genomics\/scRNA-seq_python_course_2024\/tree\/main\/Demonstrations R,&#8230;<\/p>\n","protected":false},"author":28,"featured_media":0,"parent":0,"menu_order":4,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-2075","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/pages\/2075","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/users\/28"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/comments?post=2075"}],"version-history":[{"count":3,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/pages\/2075\/revisions"}],"predecessor-version":[{"id":2353,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/pages\/2075\/revisions\/2353"}],"wp:attachment":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/media?parent=2075"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}