{"id":1959,"date":"2023-09-27T15:47:34","date_gmt":"2023-09-27T15:47:34","guid":{"rendered":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-phyton-materials\/processing-data\/single-cell-expression-atlas\/"},"modified":"2025-03-18T11:55:35","modified_gmt":"2025-03-18T11:55:35","slug":"single-cell-expression-atlas","status":"publish","type":"page","link":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/processing-data\/single-cell-expression-atlas\/","title":{"rendered":"Single cell Expression Atlas and single cell data submission"},"content":{"rendered":"\n<p><strong>Trainers:<\/strong>&nbsp;Liora Vilmovsky<\/p>\n\n\n\n<p><strong>Overview:&nbsp;<\/strong>The trainers will guide us through exploring gene expression data with a lecture and practical exercises.<\/p>\n\n\n\n<h2 class=\"wp-block-heading\"><strong>Materials<\/strong><\/h2>\n\n\n\n<ul class=\"wp-block-list\">\n<li><a href=\"https:\/\/ftp.ebi.ac.uk\/pub\/training\/2025\/Single_cell_rna_seq_analysis_using_python_2025\/Presentations\/SCseq_python_feb25_LV.pptx\">Presentation slides<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/www.ebi.ac.uk\/gxa\/sc\/home\">Single cell Expression Atlas webpage<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/www.ebi.ac.uk\/fg\/annotare\/login\/\">Annotare submission tool webpage<\/a><\/li>\n<\/ul>\n\n\n\n<h2 class=\"wp-block-heading\"><strong>Activity<\/strong><\/h2>\n\n\n\n<ul class=\"wp-block-list\">\n<li><a href=\"https:\/\/drive.google.com\/file\/d\/1Ba5Pcmg_G5mrVetsq6wmWI0Mvg2m8aAi\/view?usp=sharing\">Single Cell Expression Atlas exercises<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/drive.google.com\/file\/d\/1qmj3qwpw7FFIkrwBa2t22PmyURXwIefc\/view?usp=sharing\">Annotare exercise<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/drive.google.com\/file\/d\/1h1bG3iCi5_6jRh7FwmpOU5rtHPs_XWa7\/view?usp=sharing\">Sc-RNA samples<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/docs.google.com\/document\/d\/1HyMjWx08aNwu3s0IIkvpte0dEDajmURr\/edit?usp=sharing&amp;ouid=107001233493882804410&amp;rtpof=true&amp;sd=true\">10xV3_RNAseq_exp_info<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/drive.google.com\/drive\/folders\/1eSKJPD26lJ34osNIS4gdwfo9pOmuSjNV?usp=sharing\">fastaq-folder<\/a><\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>Trainers:&nbsp;Liora Vilmovsky Overview:&nbsp;The trainers will guide us through exploring gene expression data with a lecture and practical exercises. Materials Activity<\/p>\n","protected":false},"author":28,"featured_media":0,"parent":1947,"menu_order":2,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-1959","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/pages\/1959","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/users\/28"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/comments?post=1959"}],"version-history":[{"count":9,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/pages\/1959\/revisions"}],"predecessor-version":[{"id":2343,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/pages\/1959\/revisions\/2343"}],"up":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/pages\/1947"}],"wp:attachment":[{"href":"https:\/\/www.ebi.ac.uk\/training\/materials\/single-cell-rna-seq-analysis-using-python-materials\/wp-json\/wp\/v2\/media?parent=1959"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}